BtaINT0055763 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85524186-85525025:-
Coord C1 exon
chr10:85524950-85525025
Coord A exon
chr10:85524275-85524949
Coord C2 exon
chr10:85524186-85524274
Length
675 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GCTCCCTCCTTGCCCTGCAGGCT
3' ss Score
10.16
Exon sequences
Seq C1 exon
GAAACGCTGAATAAGCTGCTACTGAAGAAGCCCCTGCGTCCCCATAACCACCCGCTGGCAACTTATCACTACACAG
Seq A exon
GTGGGTTGGTGGGGTGGGCCGGGGGCCTCCAGGGGTCTCCAGCATCAGTGGGGCTCAGTGCTGAGTCACAACCCAGGGTGGAGCCGGGGTGGAGAGGTGGGGGGGCAGATAAGCCAAGATCCAGTGTGAGGGAACCCCAGAGCCGGAGTGGCTCTCAAGGGACTTCTGTGCCCTGCAGGGGAAGGGAGAAGGGCTCGAGCATGTGGGAGCCCATTTGGGCAAAAAAGCCCAGGAGGTGTGGGTATCAGGAGCAGGAGCCCGGGGACTGCCATGTCTTATACTGGGCACTGTGCTTTTAGAAGGACATTAACCAAGTGGCATAACCAATAGTAGCCACTGGTATCAAGCCCTGTCTGCTAGTGCATCCCATTTATGCCAGGCAGAGCACCTAGAAGCTTCTGCATGCATGGTTTTACTCAGTCTGCACCACAGACTGGCTGTTAGGTGATTTCTATTATTAGATCCCATTTCACACTTTCACAAGTGTGGAGAGTGAGGCTCAGAGGCTAAGCAGCATGGCTAGTAAGTGGCAAAAGCAGGACAGGCAGCCAGCTCTGAGTGCCTGCAGAGACGGTGGGTGGACGACCTCACGCTTTCCAGCTGCTCAGAACAGCCCCCCGCAGTGCTCCCAGGCCTATCCCACCCTCCTACCGCGGCTCCCTCCTTGCCCTGCAG
Seq C2 exon
GCTCCGACCAGTGGAAGATGGCTGAGAGGAAGCTATTCAACAAGGGCATTGCCATCTACAAGAAGGACTTCTTTCTGGTGCAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272:ENSBTAT00000012216:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development