HsaINT0187577 @ hg19
Intron Retention
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:25294]
Coordinates
chr19:48047383-48052742:-
Coord C1 exon
chr19:48052502-48052742
Coord A exon
chr19:48049238-48052501
Coord C2 exon
chr19:48047383-48049237
Length
3264 bp
Sequences
Splice sites
5' ss Seq
CCTGTATGT
5' ss Score
4.27
3' ss Seq
CTGCTTGTGTCTGGCTCCAGGAC
3' ss Score
9.26
Exon sequences
Seq C1 exon
ACCTGGGGCTAGGTGTGCTTAAGGCTAAAGAGGCTGACGAAGGAGGAAGGGCCACCTCGGGGAGTGCCAGGAAAGGAAAGCGGCAGCACAGTTCCCCTCAAAACCCACTTCTGGACTGCAGCCTGTGCGGGAAGGTGTTCAGCAGCGCCAGTTCTCTGAGCAAGCACTACCTGACACACAGCCAGGAAAGGAAGCACGTCTGCAAAATCTGCAGCAAGGCCTTTAAGCGCCAGGACCACCT
Seq A exon
GTATGTGGGAGTCTGGTCAGAAAAACGTCTGTTCAGGGGCTGGGGGTGGGGACATGTTCCTGGGTCTTCTTCCTATTCTCCCAGATCAACCTGCTGTCTCGTCCTCTGTTGGGTTTTCCAGACGTGTATTACCTCTGCTCAGCCGCAGCCACAGCCACTCCATGCTTTTTTTTTTTTTTTGTCTGTCATCCGGGCTGGAGTGTAGTGGCATGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTAGGATTACAAGCGCCCGCCACCACACCCAGCTAATTTTTGTATTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCTGACCTCAAGTGATCCTCCCGCCTTGGCCTCCCAAAGTTCTGGGATTACAGGTGTGAGCCACCGTGCCCAGCCCACTCCGTTCTTCTCACACCATCAGAGCGCAGGGAAGAGAGTGGGCGCTGCTGTCCCAGCCCCTAAATTCACGCCTGTGAGGAAGCCCCTGCTTCTGTTTGCAGATGGGCTGCTTGTGGGTTAAAAACGCCTAACAGCTGGCTTCTGAGTCAATTGTGTCATGGGAGGAGTTGGGCTAACTTTATAGAGCTATGTCCTGAGTCTCTGGTAGGTGTCTGAGGAAAACGGATCTGTGTTCTCTGTGTTTTGGGATAGCACGAGACAGGAAAGATGAGACGCCTGCTTCTAGAACATGGCAATGGAGAATTAACCCTTGTTTTTCTTTTTTTTTCTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTACAACCTTCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCAGAGCAGCTGGGACTACAGGCGCATGCCACCCCGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCTCAAACTCCTGACCTTGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAAGCGTGAGCCACCGCACCCGGCCCCAGCTTTGTTTTTCTTTTCTATTTTTTTTTTTGTTTTTTTTTCTTTTTTAAAAAACTCATTCTTTTCCTTTTAACTTTTGACTTAAAAAGTGTCAGGAGCAAAATTTCCTTTTTTTTTTTTTTTGGACAGTCTTGCTCTGTCACTCAGGCTGGAGTGCAGAGGTGTGATCTCAGCTCACTGCAAGCCTCTGCCTCCTGGGTTCAAGTGATTTTCCTGCCTCCTCATCTTGAGTAGCTAGGACTACAGGCATGCACTATCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGATTTCTCAAGTGATCTGCGTGACTCGGCCTCCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCTTAATGTCTTGGAAATGATAAGCTTGTCTTGCCTGTGGGGGAAAGAAAGACACATGTTTTTCAAACCAGGAGACCTGCAAGTGGGAGATGAAAGTACTTAGCATTCTTATGGGGCTCCTCCCTTTCACAAGGGGCTTTGACTAATCCATCTTTCATCTTATCCTCTCACCCACACCTACCCCAGGAAAAGGAGCCAATTTGCTCATGTCACAAGTTGGTAATAGCTGGGGGTAGAACTTAGGTCTCCTGATTCCCTCTCTGTTGCTTCCCTCAGACAGAGGCTGAGGGTGAGCCTTTGGGGAAAGACTTTATGATTTAGTCCACATCGACTAGGACTGTCCAGAGCAGGGCTGTTGGGGGCCCAGAGGGTGATGTACTCCTCTGCTTATATTTATAATGTGTTAATGCAGAGGTAGGTGTGATGCAATACATATTTACATGCATTTCTGTTTGCAGAAACTATAGGCACATTTGGCTGTTTGGCTCTATAATGTTTCTATGGATTGGGCCTCTGTAAATTGGCTTCTTTGCTGTGGGGGGTTCCAGGTAGCATCTTCTTAGGGGTCTCCTACGGTAAGGCACAGATTCCTTTGTTAAAGGAAGGATCGTCCCCAAGTTAGCATCTCCTCCAGTCTATTCTGCAGAATTCTGGTTCTCAGGAATGCTAATAGGGGCTTTTTGAAAACAAAACCAAAAACAGTTCTCTGGGCAAATAAGTTTGAGAGACACTGAAAGTTAAACAGGTCTCTCTCTGTGTGGCTTTTACATTTGCTACTGTGTGCCGGCTACAGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCAAGGCAGGCAGATCACTTGAGGGTCAGGAGTTCGAGACCAGCTTGGCCAACAAGGCAAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCACGCACCTGTAGTCCCAGCTACTTGGAGGCTGAGGCACAAGAATCGCTTGAACCTGGGGGGCAGAGTTGCAGTGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAACAAAAAATTAATTAATTAAATTTGCTACTGTGCATCGTGAACCTCCAAGGAGTGAATGGTGTTTTTTCAAAACTTATTTATTAGCTGTGCCAAAGTCCTTGAGGAGCAACTCTGGAGGTCTTTGTGTTCCTTGGGAACCCACTCTGGGGAAATCTGATCTGGCCTCAGTGGATTTTTTTTTTTGTATTTTTTAAAATTTTATTTATTTGTTTGTTTGTTTATTGAGATAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAATGCACTTCATCTCCTGGGTACAAGTGATTCTCTTGCCTCAGCTTCCCCAGTAGCTGGGATTACTGGCATGTGCCACTACACCCAGCTAAATTTTTTGTATTTTTAGTAGAGACGGGTTTTACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACTCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCCCGCTGGTTTTTTTTTTTTTTTTTACTTTTCTGTAAGGGGTTTGCTTAAAGGTGAGGGGAGAGGAACTCCCCTGCCAGATGGCTTTGACCGAAGCAGGGTTTGCTGGGTGGTCTTTCCTCGTGGGGGCTGAGTACAATTTCTGAATTGTGGTGCAACTGTACCACAGACTTTTGGGGGCCACCAGGGTCCTACAGCAGAAAGCCCGGTCCCAGGTGCCCCGGTGACGCCCCTGCTTGTGTCTGGCTCCAG
Seq C2 exon
GACCGGGCACATGCTCACCCACCAGAAGACAAAGCCCTTCGTGTGCATCGAGCAGGGCTGCAGCAAGAGCTACTGCGACTACCGCTCTCTGCGCCGGCACTACGAGGTCCATCACGGCCTGTGCATCCTGAAGGAAGCCCCCCCGGAGGAAGAGGCCTGCGGGGACTCCCCCCACGCCCACGAGTCGGCCGGCCAGCCGCCCCCCAGCAGCCTGCGGTCCCTGGTGCCCCCAGAGGCCAGGTCCCCCGGCTCCCTCCTGCCCCACCGGGACCTCCTGCGCCGCATCGTGAGTAGCATCGTCCACCAGAAGACCCCTTCTCCTGGCCCAGCCCCGGCGGGGGCTTCAGACAGCGAAGGGAGGAACACTGCCTGTCCCTGCCCCGCCTCATCGGGGTCCTCGTCCTGCACCCCAGCCGGCCCCCACGCGGCCCCAGCAGCGCTGGACACCGAGCTTCCCGAGGAGCCTTGCCTCCCACAGAAAGAGCCGGCCACTGACGTGTTCACAGCCCCTAATTCCAGGGCCGCCGAGAACGGCGCCCCCGACCCGCCAGAGCCGGAGCCAGATACCGCGCTGCTCCAGGCCCGGTCCACCGCGGAGTGCTGGCCCGAAGGCGGCTCCGTGCCTGCCTGCCTGCCTCTCTTCCGAGGCCAGACGGTCCCTGCCAGTTCCCAGCCATCGAGCCACAGCTTCCAGTGGCTCCGGAACCTGCCGGGCTGTCCCAAAAGCAAAGGCAACAACGTGTTTGTTGTCCACAAGCCCTCGGCCGTGCCCTCGCGGGAGGGCTCCGAGTCTGGCCCGGGACCCAGCAGCGGAAGCCCCTCGGAGGAGTCCCCGCCCGGCCCCGGCGGTGGCCTGGAGGATGCTCTGCCCTTCCCTGCCGCGCTCCTCAGGGTCCCCGCGGAGGCCCCGAGCGACCCCAGGTCGGCCAGCGGGGAAGATGACCCCTGCGCCCCCAAGAAGGTCAAGGTCGACTGCGACTCCTTCCTGTGCCAGAACCCCGGGGAGCCCGGCCTCCAGGAGGCCCAGAAGGCAGGCGGGCTCCCTGCGGATGCCTCGCCGCTCTTCCGCCAGCTCTTCCTCAAGTCGCAGGAACCTCTTGTGAGCCACGAGCAGATGCAGGTGTTCCAGATGATCACCAAGTCCCAGCGGATCTTCTCCCATGCCCAGGTGGCAGCAGTCTCCTCCCAGCTCCCTGCGCCCGAGGGCAAACCAGCCGCCCTGAGGCCGCTGCAGGGGCCGTGGCCGCAGCAGCCCCCACCACTGGCTCCTGCTGTGGACTCTCTCCACGCCGGCCCTGGAAACCCCGAGGCAGAGGGCTCCCCAGCCCGCAGGAGAAAAACCACACCCGGGGTTCCCAGAGAGGCCTCCCCCGGCAGCACGAGACGAGACGCAAAGGGGGGACTGAAAGTGGCCGCGGTTCCAACGCCCCTTGCAGCACCGTCTCTGGACCCTTCCAGGAATCCAGACATCTCTTCTCTGGCCAAGCAGCTGCGATCCTCTAAAGGGACCTTGGACCTGGAGGACATCTTCCCCTCCACAGGCCAACGGCAGACCCAGTTAGGTGGGGAGGAGCCACCAGGAGCCTCGCTGCCAGGGAAGCAGGCCCCAGCCGAGAATGGCGCGGCTTCAAGGATCACAAAAGGTGAAAAGGGCCCAGCCTGCTCCCGGGGTGGAGGCTACCGGCTCTTGGGCAACCCCAGGGCCCCGCGATTCTCCGGCTTCCGGAAAGAGAAGGCGAAGATGGATATGTGCTGTGCGGCTTCTCCGAGCCAGGTAGCCATGGCCTCCTTCTCATCGGCCGGGCCCCCGGCAGATCCCTCCAAGTCCAAGCTGACAATATTCAGCAGAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156-ZNF541:NM_001101419:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.272 A=NA C2=0.817
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=29.6),PF0009621=zf-C2H2=PU(65.2=18.5)
A:
NA
C2:
PF0009621=zf-C2H2=PD(30.4=1.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)