HsaEX6095853 @ hg19
Exon Skipping
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:25294]
Coordinates
chr19:48044150-48052742:-
Coord C1 exon
chr19:48052502-48052742
Coord A exon
chr19:48047383-48049237
Coord C2 exon
chr19:48044150-48044208
Length
1855 bp
Sequences
Splice sites
3' ss Seq
CTGCTTGTGTCTGGCTCCAGGAC
3' ss Score
9.26
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
ACCTGGGGCTAGGTGTGCTTAAGGCTAAAGAGGCTGACGAAGGAGGAAGGGCCACCTCGGGGAGTGCCAGGAAAGGAAAGCGGCAGCACAGTTCCCCTCAAAACCCACTTCTGGACTGCAGCCTGTGCGGGAAGGTGTTCAGCAGCGCCAGTTCTCTGAGCAAGCACTACCTGACACACAGCCAGGAAAGGAAGCACGTCTGCAAAATCTGCAGCAAGGCCTTTAAGCGCCAGGACCACCT
Seq A exon
GACCGGGCACATGCTCACCCACCAGAAGACAAAGCCCTTCGTGTGCATCGAGCAGGGCTGCAGCAAGAGCTACTGCGACTACCGCTCTCTGCGCCGGCACTACGAGGTCCATCACGGCCTGTGCATCCTGAAGGAAGCCCCCCCGGAGGAAGAGGCCTGCGGGGACTCCCCCCACGCCCACGAGTCGGCCGGCCAGCCGCCCCCCAGCAGCCTGCGGTCCCTGGTGCCCCCAGAGGCCAGGTCCCCCGGCTCCCTCCTGCCCCACCGGGACCTCCTGCGCCGCATCGTGAGTAGCATCGTCCACCAGAAGACCCCTTCTCCTGGCCCAGCCCCGGCGGGGGCTTCAGACAGCGAAGGGAGGAACACTGCCTGTCCCTGCCCCGCCTCATCGGGGTCCTCGTCCTGCACCCCAGCCGGCCCCCACGCGGCCCCAGCAGCGCTGGACACCGAGCTTCCCGAGGAGCCTTGCCTCCCACAGAAAGAGCCGGCCACTGACGTGTTCACAGCCCCTAATTCCAGGGCCGCCGAGAACGGCGCCCCCGACCCGCCAGAGCCGGAGCCAGATACCGCGCTGCTCCAGGCCCGGTCCACCGCGGAGTGCTGGCCCGAAGGCGGCTCCGTGCCTGCCTGCCTGCCTCTCTTCCGAGGCCAGACGGTCCCTGCCAGTTCCCAGCCATCGAGCCACAGCTTCCAGTGGCTCCGGAACCTGCCGGGCTGTCCCAAAAGCAAAGGCAACAACGTGTTTGTTGTCCACAAGCCCTCGGCCGTGCCCTCGCGGGAGGGCTCCGAGTCTGGCCCGGGACCCAGCAGCGGAAGCCCCTCGGAGGAGTCCCCGCCCGGCCCCGGCGGTGGCCTGGAGGATGCTCTGCCCTTCCCTGCCGCGCTCCTCAGGGTCCCCGCGGAGGCCCCGAGCGACCCCAGGTCGGCCAGCGGGGAAGATGACCCCTGCGCCCCCAAGAAGGTCAAGGTCGACTGCGACTCCTTCCTGTGCCAGAACCCCGGGGAGCCCGGCCTCCAGGAGGCCCAGAAGGCAGGCGGGCTCCCTGCGGATGCCTCGCCGCTCTTCCGCCAGCTCTTCCTCAAGTCGCAGGAACCTCTTGTGAGCCACGAGCAGATGCAGGTGTTCCAGATGATCACCAAGTCCCAGCGGATCTTCTCCCATGCCCAGGTGGCAGCAGTCTCCTCCCAGCTCCCTGCGCCCGAGGGCAAACCAGCCGCCCTGAGGCCGCTGCAGGGGCCGTGGCCGCAGCAGCCCCCACCACTGGCTCCTGCTGTGGACTCTCTCCACGCCGGCCCTGGAAACCCCGAGGCAGAGGGCTCCCCAGCCCGCAGGAGAAAAACCACACCCGGGGTTCCCAGAGAGGCCTCCCCCGGCAGCACGAGACGAGACGCAAAGGGGGGACTGAAAGTGGCCGCGGTTCCAACGCCCCTTGCAGCACCGTCTCTGGACCCTTCCAGGAATCCAGACATCTCTTCTCTGGCCAAGCAGCTGCGATCCTCTAAAGGGACCTTGGACCTGGAGGACATCTTCCCCTCCACAGGCCAACGGCAGACCCAGTTAGGTGGGGAGGAGCCACCAGGAGCCTCGCTGCCAGGGAAGCAGGCCCCAGCCGAGAATGGCGCGGCTTCAAGGATCACAAAAGGTGAAAAGGGCCCAGCCTGCTCCCGGGGTGGAGGCTACCGGCTCTTGGGCAACCCCAGGGCCCCGCGATTCTCCGGCTTCCGGAAAGAGAAGGCGAAGATGGATATGTGCTGTGCGGCTTCTCCGAGCCAGGTAGCCATGGCCTCCTTCTCATCGGCCGGGCCCCCGGCAGATCCCTCCAAGTCCAAGCTGACAATATTCAGCAGAATCCAG
Seq C2 exon
GGTGGAAACATCTACAGGCTCCCCCATCCGGTGAAGGAAGAGAATGTGGCAGGCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156-'1-4,'1-1,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.272 A=0.817 C2=0.840
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=29.6),PF0009621=zf-C2H2=PU(65.2=18.5)
A:
PF0009621=zf-C2H2=PD(30.4=1.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGCTAGGTGTGCTTAAG
R:
CTGCCTGCCACATTCTCTTCC
Band lengths:
295-2150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)