MmuEX6008508 @ mm10
Exon Skipping
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16076347-16081736:+
Coord C1 exon
chr7:16076347-16076587
Coord A exon
chr7:16077972-16079826
Coord C2 exon
chr7:16081678-16081736
Length
1855 bp
Sequences
Splice sites
3' ss Seq
CTTTCCATGTTTCACTACAGGAC
3' ss Score
9.99
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACCTGGGGCTGGGCGCACTCAAGGTGCCTAAAGAGGCTGATGAAGGAGGCAGGGCCACTGGGAGTACAAGGAAAGGCAAGCGACAGCACAGTTCCCCTCAGAATCCACTCCTGGACTGCAGCCTGTGTGGGAAAGTGTTCAGCAGCGCCAGTTCCCTGAGCAAGCATTACCTGACGCACAGCCAGGAGAGAAAACACGTGTGCAAAGTCTGCAGCAAAGCCTTCAAGCGGCAGGACCACCT
Seq A exon
GACTGGGCACATGCTCACCCACCAGAAGACCAAGCCCTTTGTGTGCATTGAGCAAGGTTGCAGCAAGAGCTACTGTGACTACCGCTCGCTGCGCCGCCACTATGAAGTCCAGCATGGAGTATGCATCCTGAAGGAGACTCCACCAGAAGAGGAGGCCTATGGGGACCCAACTCACAACCATGATGTGGCTAACCAGCCTCCACCCAGTGGCCTGAGGTCCCTGGGGCCCCCAGAAGCTAGGTCCCCTGGCTCTGTCTTGCCCAACAGAGACCTCCTTCGCTGTATTGTGAGCAGCATCGTCCACCAGAAGATTCCTTCTCCTGGCCCAGCAGTGGGGCCTTCTGATACTGAAGCAAGGAGCTCAGCCTGTGCTTGCCCCACCTCACTGGGATCATCATCATGTACACCAGCCAGCACCCCAGTGGCCCTAGGAACCCTGGGCTCTGAGATTCCTGAGGAAACTCATCCCCCACGGAAGGAAGCTGCCACCGAAGTGTTCACACCTGTCCAGTCAAGGGCAGCTGAGAATGGTGTCCCCGATCCACCAGAGTCAGAGTTGGAGTCAGAGTCTCCACGGCTTCAACGGCCATCCTCCCTGGAAGGCTGGCCAGAGGGCAGCTCTCTGCCTGCCTGCCTGCCTCTCTTCAGAGGCCACTCTGTCCCCTCAGGATCCCAGCCTTCCAGCCACAACTTCCAGTGGCTCCGGAACCTGCCTGGCTGTCCCAAGAACAAAGGCAGCAATGTGTTTATGGTCCACAAGCCCCCTGCAGTGGCATCCCGGGAGGGCTCTGAGGGAGGAGGCTCTGGACCCAGCAGCACCCCTACCTCAGTGGAGCCTTCACCCAGCCTGGGCACCACCCAGGAGGAACTCTTGCCATTTCCTCCTGCACTACTAAAGGCCCCTGGTGAGGCCTCCAGTGAAGTTCGGCAGGCAGCTGGGGAAGATGAAACCTGGGCTCCCAAAAAGTGCAAACCTGACTGTGAGTCATTCCCATGGCAGAGCCCCACTGAGCTTGGGCTCCAAGATGCACAGAACCCAGGTGGGCTCCCCTCAGATGCCACGCCCCTCTTCCGGCAGCTGTTCATGAAGTCACAGGAGTCTCTAGTAAGCCATGAGCAGATGCAGGTGCTCCAGATGATTGCCAAGTCCCAGCGGATCTTCTCCCATACTCAGGTGGCTACAGCCTCAGCCCAGAGACCAGGGCCCGAGGGCAAGCAGTCCACTCTGAAGCCATTGCAGGGGCCATGGCCACCACAAACTCTGCCACCAGCACCCACTGTAGACTCTTTCCAGATAGGCCCTGGACACTCAGAGCCAGAAGGATCCCCAGTCCGCAGGAGGAAAACTATGCCTGCGGTGTCCAGAGAAACATCTCCTGGTGGCCCTAGGCGAGACACAAAAGGAGGCCCCAAAGTGGCCTCTGCACCACCATCCCTCACAGGGCCAGGCCTGCTCCCCTCCCGGAATCCAGACAGCTCTTCATTGGCCAAAGGGACATTGGACCTGGGGGACATTATCCCCAATGCAGGCTCAAGGCAGTCCCAGTTAGGTGGAGATGAGCCAGCTGGAACCCAGCTGGTTGGGAAACAGGGGCAAGGAGAAAATGGCCTGGCTTCAGGGGCCATGAGAGGTGAGAAGGGTCCAGCCTGCCCCCGAGGTGGAGGCTACAGGCTCTTCTCAGGGCACCCCAGGGCCCAGAGATTCTCAGGTTTCCGGAAGGAGAAAGTGAAGATGGATGTGTGCTGTGCAGCTTCTCCCAGCCAGGTGGCCATGGCCTCCTTTTCATCGGCTGGGCCTCTGGCAGATCCACCCAGAGACATGAAGTCCAAGCTGACAATCTTCAACAGAATCCAG
Seq C2 exon
GGTGGAAACATTTACAGACTCCCCCATCCAGTGAAGGAAGAGAGCTTGGCAGGCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796-'1-21,'1-10,12-21=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=0.815 C2=0.470
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=29.6),PF0009621=zf-C2H2=PU(65.2=18.5)
A:
PF0009621=zf-C2H2=PD(30.4=1.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCAAGGTGCCTAAAGAGG
R:
CCTGCCAAGCTCTCTTCCTTC
Band lengths:
279-2134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types