BtaEX6083209 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012606 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr18:54943153-54949441:-
Coord C1 exon
chr18:54949198-54949441
Coord A exon
chr18:54945379-54947197
Coord C2 exon
chr18:54943153-54943211
Length
1819 bp
Sequences
Splice sites
3' ss Seq
CCGTGCTCGTGTGCTTCCAGGAC
3' ss Score
9.39
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
ACCTGGGGCAGGGCGCCCTCAAGGTGCCCAAAGAAGCGGATGAAGGAGGCCGGGCCACCTCGGGGAGCGCACGGAAAGGCAAGCGGCAGCACAGCTCCCCTCAGAACACACTCCTGGACTGCAGCCTCTGCGGGAAGGTGTTCAGCAGCGCCAGCTCCCTGAGCAAGCACTACCTGACGCACAGCCAGGAGAGGAAGCACGTGTGCAAGATCTGCAGCAAGGCCTTCAAGCGGCAGGACCACCT
Seq A exon
GACCGGACACATGCTCACCCACCAGAAGACCAAGCCCTTCGTGTGCATCGAGCAGGGCTGCAGCAAGAGCTACTGCGACTACCGCTCGCTGCGCCGGCACTACGAGGTCCAGCACGGCCTGTGCATCCTCAAGGAGGTGCCCCCGGAGGAGGAGGCCTGTGGGGACTCACCCCACATGCACGAGGTGGCAGGCCAGCCCACACCATCCGGCCTGAGGTCCCCCGGTTCCCTCCTGCCCAACCGAGACTTCCTGCGCTGCCTCGTGAACAGCATCGTCCACCACAAGATCCCTTCCCCGGGGCCGGCTGGGCTTGCGGACAGCGGTGAGGGGAGGAACATGGCCTGCTCCTGCCCGTCCTCGGGGTCTTCCTGCTGCGGCCCAGCTGGCACCCCGGGGACCCTGGGCCCTGACGTTCTCGAGGAGTCGAGGCCCTCAAGGAAGGAGCCTGCCGCTGACGTGTTCACGGCCATTCACTCGCGGGCGGCGGAGAGCAGCGGCCCCGACCCAGCCGAGCTAGAGCCACTCCAGCTCTCGTCCTCCCTGGAGGGCTGGCCCGAGGGCGCCCCTCTGCCCTCCTGCCTGCCTCTGTTCCGTGGCCAGACAATCCCCACCACTGGTTCCCAGCCATCAAGCCACAGTTTCCAGTGGCTGCAGAACCTGTCGGGCTGCCCCAAGAGCAAAGGGAATGGTATGTTTGTCGTCCATAAGCCGCCATCCCAGGAGGCCTCTGAGCCTGGCCCTGGGCTCAGCAGCACCTCCCTAGTGGGGGAACCCTCAGCTGGCCTGGGGCTCGGCCCAGAGGACGTGCCGCCCTTCCCTCCCATGCTCCTGAAGGCTCCCGGGGAGGCCTCGGGGGACCCCAGATTTGCCTGTGCCAGTGGGGATGATGACTGCTGGGCTCCCAAGAAGAGCAAGTTTGACTGCGACTCCTTCCGGTGGCCGAAACCCGGGGACCCTGGCTCGCAGGATCCTGGCTTGAAGCCCAGCAGCCTCTCGTCGGATGCCACGCCGCTCTTCCGGCAGCTCTTCCTGAAGTCGCAGGAGTCCCTGGTGAGCCACGAGCAGATGCAGGTGTTCCAGATGATCACCAAGTCCCAGCGGATCTTCTCTCATGCCCAGGTGGCCACCGCTTCCTCCCAGCTCCCCACTCCCGATGGCAAGCAGGGCCCCCTGAAGCCGCTGCAGGGGCCACGGCCACAGCAGCCCCCGTCTCTGACGCCCACTGTTGACTCTCTCCGTGCTGGCCCCATGAACCCTGAGCCAGAGGGCTCCCCAGCCCGCCGGAGAAAATCCACACCCACTTTCCCCAGGGAGGCCTCACCTGGCGGCATGAGCCGGGATGCAAAGGGTGGGCCAAAAGTGGCTGCTGCTCCGCCAGCCCTCACAGCGTCATCCCTGGACCCTCCCGGGAACCCGGACATCTCTTCTCTGGCCAAGCAGTTGAGGTCCTCAAAAGGGACCTTGGATCTGGGCGATATCTTCTCTCCCGGGGGCCTGCGTCAGACCCAGTTAGGAGGGGACGAGCCATCTGGAACCCACCTCCCAGGGAAGCAGACCCAGGCTGAGAATGGCATGGCCTCTGGGGCCACAAAAGCCGAAAAGGGCCCGGCCTGCTCCCGGGGTGGAGGCTACAGGCTCTTCTCCGGCAACTCCAGAGCACAGCGCTTTTCAGGCGTCCGGAAGGAGAAGGTGAAAATGGATATGTGCTGTGCGGCTTCCCCGAGTCAGGTGGCCATGGCTTCCTTCTCGTCGGCAGGGCCTCCAGCAGACCTCTCCAGGGACTCCAAGTCCAAACTGACGATATTCAACAGGATCCAG
Seq C2 exon
GGTGGAAATATCTACCGGCTCCCCCACCCGATGAAGGAGGAGAACGTGGCCAGCGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012606-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.402 A=0.716 C2=0.800
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=29.3),PF0009621=zf-C2H2=PU(65.2=18.3)
A:
PF0009621=zf-C2H2=PD(30.4=1.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCTCAAGGTGCCCAA
R:
CGCTGGCCACGTTCTCCT
Band lengths:
286-2105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]