RnoEX6001405 @ rn6
Exon Skipping
Gene
ENSRNOG00000021800 | Zfp541
Description
zinc finger protein 541 [Source:RGD Symbol;Acc:1310756]
Coordinates
chr1:77972219-77977245:+
Coord C1 exon
chr1:77972219-77972459
Coord A exon
chr1:77973843-77975694
Coord C2 exon
chr1:77977187-77977245
Length
1852 bp
Sequences
Splice sites
3' ss Seq
CCTTCCATGTCTCACTACAGGAC
3' ss Score
9.51
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ACCTGGGGCTGGGCACACTCAAGGTGCCTAAAGAGGCTGATGAAGGAGGCAGGGCCACTGGGAGTACAAGGAAAGGCAAGCGGCAGCACAGTTCCCCTCAGAATCCACTCCTGGACTGCAGCCTGTGCGGGAAAGTGTTCAGCAGTGCCAGTTCCCTGAGCAAGCATTACCTGACGCACAGCCAGGAGAGGAAACACGTGTGCAAAGTCTGCAGCAAGGCCTTCAAGCGGCAGGACCACCT
Seq A exon
GACTGGGCACATGCTCACCCACCAGAAGACCAAGCCCTTTGTGTGCATTGAGCAGGGTTGCAGCAAGAGCTACTGTGACTACCGCTCACTGCGCCGCCACTATGAAGTCCAGCATGGAGTATGCATCCTGAAGGAGGCTCCACCAGAAGAGGAGTCCTATGGGGACCCAACCCACAACCATGATGTGGCCAACCAGCCTCCACCCAGTGGCTTGAGGTCCCTGGGGCCCCCAGAAGCTAGGTCCCCAGGCTCTGTCTTGCCCAACCGAGACCTCCTCCGCTGTATTGTGAGTAGCATCGTCCACCAGAAGATTCCTTCTCCTGGCCCAGCAGTGGGGTCTTCTGATACTGAAGCAAGGAGCTCAGCCTGTGCCTGCCCCACCTCATTGGGGTCATCATCATGTACACCGGCCAGCACCCCAGTGGCCCCAGGAACCCTGGGCTCTGAGATTCCTGAGGAAACTCATCCCCCACGAAAGGAAGCTGCCACTGAAATGTTCACAGCTGTCCAGTCAAGAGCAGCTGAGAACAGTGCCCCTGATCCACCAGAGTCAGAGTTAGAGTCAGAGTCTCCACGACTTCAACGGCCATCCTCTCTGGAGGGCTGGCCAGAGGGCAGCTCCCTGCCTGCCTGCCTGCCTCTCTTTAGAGGCCACTCTGTCCCCTCAGGATCCCAGCCTTCCAGCCACAACTTCCAGTGGCTCCGGAACCTGCCCAGCTGTCCCAAGAACAAAAGCAGCAATGTGTTTATGGTCCACAAGCCCTCTGCAGTGGCATCCCGGGAGGGCTCTGAGGGGGGCTCTGGGCCCAGCAGTACCCCGACCTCAGTGGAGCCTTCACCCAGCCTGGGCACCAGCCAGGAGGACCTGCTGCCATTTCCTCCTGCACTCCTAAAGGCCCCTGGTGAGGCCTCCAGTGAAGTCCGGCAGGTAGCTGGGGAAGATGAAACCTGGGCTCCCAAAAAGTGCAAACCCGACTGTGAGTCATTCCCATGGCAGAGCCCCACTGAGCTAGGGCTCCAAGATGCACAGAACCCAGGTGGACTCCCCTCAGATGCCACACCCCTCTTCCGGCAGCTTTTCATGAAGTCACAGGAGTCTCTGGTAAGCCATGAGCAGATGCAGGTGCTCCAAATGATTGCCAAGTCCCAGCGGATCTTCTCCCATACCCAGGTGGCTACAGCCGCAGCCCAGAGACCAGGGCCTGAGGGCAAGCAGTCCACTCTGAAGCCATTGCAGGGGCCATGGCCACCACAAACTCTGCCACCAGTACCCACTGTAGACTCTTTCCAGATAGGCCCTGGACACTCAGAACCAGAGGGATCCCCAGTCCGCAGGAGGAAAACCATGCCTGCAGTGTCCAGAGAAACATCTCCTGGGGGCCCTAGGCGAGACACAAAAGGAGGCCCCAAAGTGGCCTCTGCACCACCATCCCTCACAGGGCCAGCTCTGCACCCCTCCCGGAATCCAGACAACTCTTCCTTGGCCAAAGGGACCTTGGACCTGGGAGACATTATCCCCAGTGCCGGCTCAAGGCAGTCCCAGTTAGGTGGAGATGAGCCATCTGGAACCCAGCTGGTTGGGAAACAGGGGCAAGGAGAGAATGGCCTGGCTTCAGGGGCCATGAGAGGTGAGAAGGGCCCAGCCTGCCCCCGAGGTGGAGGCTACAGGCTCTTCTCAGGGCACCCCAGGGCCCAGAGATTCTCAGGTTTCCGGAAGGAGAAAGTAAAGATGGATGTGTGCTGTGCAGCTTCTCCCAGCCAAGTGGCCATGGCCTCCTTCTCATCAGCCGGGCCCCTGGCAGATCCACCCAGAGACATGAAGTCCAAGCTGACAATCTTCAACAGAATCCAG
Seq C2 exon
GGTGGAAACATCTACAGACTCCCCCATCCAGTGAAGGAAGAGAGCTTGGCAGGCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021800-'4-6,'4-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=0.814 C2=0.750
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=29.6),PF0009621=zf-C2H2=PU(65.2=18.5)
A:
PF0009621=zf-C2H2=PD(30.4=1.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGCACACTCAAGG
R:
CATCCGCCTGCCAAGCTC
Band lengths:
294-2146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]