HsaINT0187627 @ hg38
Intron Retention
Gene
ENSG00000186300 | ZNF555
Description
zinc finger protein 555 [Source:HGNC Symbol;Acc:HGNC:28382]
Coordinates
chr19:2850587-2851651:+
Coord C1 exon
chr19:2850587-2850713
Coord A exon
chr19:2850714-2851467
Coord C2 exon
chr19:2851468-2851651
Length
754 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TGTTTACTTTTTGGTTTCAGATG
3' ss Score
9.93
Exon sequences
Seq C1 exon
GACTCAGTGGTCTTTGAGGATGTGGCTGTGGACTTCACCCTGGAGGAGTGGGCTTTGCTGGATTCTGCTCAGAGGGACCTCTACAGAGATGTGATGCTGGAGACCTTTCAGAACCTGGCCTCAGTAG
Seq A exon
GTAAGGATGACATCATTCCTTCCTTCACGTAGTTATTGAGAGAACAAGTATTTCTTACACATCAGACCTGTTCCAAGGCTTGGAATGTGGAAAGGGAATAAATTGGTAAATAAGACAGACATAGTCACAGCTGTCATAGAGCTAGAATGTAATGTTTTTCCATGAGAATGAGAATCTGTATTTCAGCTTTTTATTTTTGTAGAGAAAGCTCCCTTCATGTCGTCATTGTGGATATAGCTTTGATAGGCCTAGTGAAATTTGTTTGTGCAAGCCAGTGAAAATTTGATTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCGACTCACTGCAACCTCTGCCTCCCGAGTTCAAGCAATTATCTGCCTCAGGCGCCCAAGTAGCTGGGATTACAGGCGAGCGCCACCATCCCTGGCCAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTCAGCCAGGCTGCTCTTGAACTCCTGACGTTGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCGTGAATTTTTTTTTTTAATAATTTTTCTATGCTTACTAATACTGTGTTGATTGAGTTGCTTACCTTTTTGACCATTTTGTGTTTAATGAAGTCCTGAGATAGCTAAACTCCTCAGTGTCGTTTTCCGCTAACAAGTGCCTTCTTATATGATTTGTTTACTTTTTGGTTTCAG
Seq C2 exon
ATGATGAAACTCAATTTAAGGCCAGTGGGTCAGTTTCTCAGCAGGATATTTATGGAGAGAAAATACCCAAGGAATCTAAAATAGCCACGTTCACCAGAAATGTTTCCTGGGCCTCTGTTTTAGGAAAAATTTGGGACAGTCTTAGCATCGAAGATCAAACCACAAACCAGGGGAGAAATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186300:ENST00000334241:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.145
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCAGTGGTCTTTGAGGATGT
R:
TGAGATTTCTCCCCTGGTTTGTG
Band lengths:
310-1064
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains