BtaINT0165711 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008397 | ZNF555
Description
Bos taurus zinc finger protein 555 (ZNF555), mRNA. [Source:RefSeq mRNA;Acc:NM_001082449]
Coordinates
chr7:22092181-22092910:-
Coord C1 exon
chr7:22092784-22092910
Coord A exon
chr7:22092365-22092783
Coord C2 exon
chr7:22092181-22092364
Length
419 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TATTCCCTTTTTGCTTTCAGATG
3' ss Score
10.54
Exon sequences
Seq C1 exon
GACTTGGTGGTCTTCGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGGCTTTGCTGGATTCTTCTCAGAAGGAGCTCTACAGAGATGTGATGCTGGAGACCTTCAGAAACCTAGCCTCAGTGG
Seq A exon
GTAAGAATGATGTCATTCTTTAACTTAGTTATTTAGAGACAAGCATATCTGGCACATCACTGTTCTGAGATGTAGAATGTAAAAAGGAATTATGTTAACTAATAAGATAGATGTGGTCACAACTATCATAGAATCTACCCACAAAAAATGTGAATCTATATATTAAACTAAGTTTTTCTTTCTGTAAAGAAATTTCCCTTAGTATCACTAGTAGATACAGGTTTCATGGGGCCTTGGAGGTCCCAGTAAGTTCTGTTTTAGAACCTTGAGAGAATTTTACTGTGTTTATTAAAGTGCTCACCATTTTGACCCCTTGTACTTGTTTTTGATGAAGTCTTGACACAGATAAATGCCTCAGTTTCTTTCTGAGCTAACAGGTACTTTCTTTCTTGTAAAATTTATTCCCTTTTTGCTTTCAG
Seq C2 exon
ATGGTGAGACTCAATATAAGGCCAATGGGTCAGTTTCTCAGCAGGATATTTATAGGAATAAAATATCCAAAGAACATAAAATATCAAAGTTCACTGGAAATGATTCCTGGCCCTTTGTCTTAGGAAAAGTTTGGGAAGAACTCAGCATTGAAGATCAGTACACATACCAGAGTAGACACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008397:ENSBTAT00000011050:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGGTGGTCTTCGAGGATG
R:
TTGGGTGTCTACTCTGGTATGTGT
Band lengths:
310-729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]