HsaINT0187641 @ hg19
Intron Retention
Gene
ENSG00000167785 | ZNF558
Description
zinc finger protein 558 [Source:HGNC Symbol;Acc:26422]
Coordinates
chr19:8923237-8923898:-
Coord C1 exon
chr19:8923803-8923898
Coord A exon
chr19:8923320-8923802
Coord C2 exon
chr19:8923237-8923319
Length
483 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCTTTTCAATTTGTTTCAGATT
3' ss Score
10.52
Exon sequences
Seq C1 exon
GGTGTCGTGTTAATAAACCCAGTCTGATATCCCAGTTGGAACAAGACAAGAAGGTGGTGACAGAGGAAAGAGGAATTCTACCAAGCACCTGTCCAG
Seq A exon
GTGAGCACCAGGTGGATATGAGCCCTTGTGAGGAATAGCTCTGGCCAGTGACTTGGGGGTTGGGAGTATTACATTAGTTCATGTCAATCAGGGAACTTTGTAAAATACCCTGTTCCTGACAAACATGCACGAGAACATTTGGTGTGAGCTTCCTCATGTCCTTTCTTTTCTCTCTAACTCCCTTGTCATCATCTCATACTTCACTTTGGGCTCAGGGAAGAAACAAAGATGCAACTCTTTTGAAAATTTCAGTCAAGTTCCTTTCCACTTTGCATTCCTGATCACTCCTCTTGTCAATCTGTGATCAATCTCAATTTGTCTAGAATCCTTTTTTAAAATTAATACCTAAAATTTTCATAACCAAATCCTCTTTGTTGCAAACATCCTCAAAAACCCTGATCCCTCAGAATCTGCCTTTACTCATGTGTACACTTTTCCATTTCTTTTCTCCATCAACCTAAATTTCTTTTCAATTTGTTTCAG
Seq C2 exon
ATTTGGAGACTCTACTTAAAGCCAAATGGTTAACTCCTAAGAAGAATGTTTTCAGAAAAGAACAGTCTAAAGGTGTAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167785-ZNF558:NM_144693:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)