HsaINT0187641 @ hg38
Intron Retention
Gene
ENSG00000167785 | ZNF558
Description
zinc finger protein 558 [Source:HGNC Symbol;Acc:HGNC:26422]
Coordinates
chr19:8812561-8813222:-
Coord C1 exon
chr19:8813127-8813222
Coord A exon
chr19:8812644-8813126
Coord C2 exon
chr19:8812561-8812643
Length
483 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCTTTTCAATTTGTTTCAGATT
3' ss Score
10.52
Exon sequences
Seq C1 exon
GGTGTCGTGTTAATAAACCCAGTCTGATATCCCAGTTGGAACAAGACAAGAAGGTGGTGACAGAGGAAAGAGGAATTCTACCAAGCACCTGTCCAG
Seq A exon
GTGAGCACCAGGTGGATATGAGCCCTTGTGAGGAATAGCTCTGGCCAGTGACTTGGGGGTTGGGAGTATTACATTAGTTCATGTCAATCAGGGAACTTTGTAAAATACCCTGTTCCTGACAAACATGCACGAGAACATTTGGTGTGAGCTTCCTCATGTCCTTTCTTTTCTCTCTAACTCCCTTGTCATCATCTCATACTTCACTTTGGGCTCAGGGAAGAAACAAAGATGCAACTCTTTTGAAAATTTCAGTCAAGTTCCTTTCCACTTTGCATTCCTGATCACTCCTCTTGTCAATCTGTGATCAATCTCAATTTGTCTAGAATCCTTTTTTAAAATTAATACCTAAAATTTTCATAACCAAATCCTCTTTGTTGCAAACATCCTCAAAAACCCTGATCCCTCAGAATCTGCCTTTACTCATGTGTACACTTTTCCATTTCTTTTCTCCATCAACCTAAATTTCTTTTCAATTTGTTTCAG
Seq C2 exon
ATTTGGAGACTCTACTTAAAGCCAAATGGTTAACTCCTAAGAAGAATGTTTTCAGAAAAGAACAGTCTAAAGGTGTAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167785:ENST00000601372:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains