HsaINT0187657 @ hg38
Intron Retention
Gene
ENSG00000171469 | ZNF561
Description
zinc finger protein 561 [Source:HGNC Symbol;Acc:HGNC:28684]
Coordinates
chr19:9619432-9621399:-
Coord C1 exon
chr19:9621162-9621399
Coord A exon
chr19:9619583-9621161
Coord C2 exon
chr19:9619432-9619582
Length
1579 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TTGATGATTGATATGAACAGGAC
3' ss Score
3.98
Exon sequences
Seq C1 exon
GTTCTGCATCCCCCTCCCTGAGCCAACCCCAGGCCCTTTCTGCACCCACCCGAGAGGAAACTAGAATTTCTGTGTTCTACCCGGTCCTACGTGGCTGAAACTGGAGCCCACGAGCCTCGCCCGGCCAGAGTGTTGAAGCGGAAGTGACGTCAGCGCACCACCGCCATCTTTTCCGGCGCTGGCTCCTCTCCGTCAGTGCGGTTTCGCCTTTATGGTGGTGGAGTCTGCCCAGGCTGTG
Seq A exon
GTGAGTTCCACCTCCTTGGCGGTCCCGGGGATAGCAGGGGGCGGCAAAGGAATGATTGCGCGCTGTCGCCTAGGAGCCTCTCAGATCCGCTTCACTTCACTCGCTTCTCCAGGGACTATCAGTCCTCCCTGTGCGTCCAGTTCGGAGAGGCTGCGCGCTCTCTCGGCTCACTGCAACCTCTGCAACCTCTGCCTCCAGGGTCAAGCAGTTCTCCTGCCTCAGCCTTCCGAGTACCTGGGATTACAGGCAAGTGCCACCACGCCCGGCTACTTTTTCTATCTTTAGTAGAGATGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTTAGGTGATCTGTCTGCCTCGGTCCCCCAAAGTGCTGGGATTATAGGTGTGAGCCACTGCACCCGGCCGACTTTTGAAAATTTTAGATTTTGTTCTTAAGTCATCTTAGGTACGTAATGAAGTTATCAATAACACACGTGGCTGGTGACTACTGAATTGTTCTGTGCAGGTCTGCACTGTCTTCTGGTCATATGGCGGGGGGGTAACACCATATACAGGAGATCAGGCTCTAGGGACAAGTATCAGACCGACTACTAGGGTTGTTTGAGTGTAGGTTTTTTTCAGTATTAAATAGAAGTAATGGGCCAGGCATCGTGGCTTATGCTTATTATCCCAGCACTTTGGGAGGCCAAGTCAGGAGGATTGTTTGAGCCCAGGAGTTTGAGACTAGCCTAGGCAATCTGGTGAAAACTTGTCTCTACTAAAACTACAAAAAATTAGCCGGACCCAGTGGTGTGCACCTGTAGTCCCAGCTAGTTGGGGGGCTGAAGTGGGAGAATCACTTAAGGCCAGGAGTTCAAGACCAGCCTGGCCAATATGGCGAAACTGCGTCTCTACTAAAAATGCAAAAATTAGCCAGGCATGGTAGTGCATACCTGAAATCCCAGCTACTCGGGAGGCTGAGGCCTGATAATCGCTTGCACCTGGGAGGCAGAGGTTGCAATGAGTTGAGATCATGCCACTGCATTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCAAAATAATAATAATAATAATGAGTGATGATACGCACCTATGGTCCCAGCTATTCAGGAGGCTGAAGTGGGAGGATCACTTGAGCCCGGGAAGTCTAGGCTACAGAGAGTTGTGTTAGTGCCATTGGATTTCAACCTGGGCAACAGAGTGAGACCCTGTCTCGATAGATAGATAGATAGATAGATAGGATAGATATAGATAGATAGATATAGATAGATATATAGATAGATAGATATAGATAGATAAATATAGATAGATATAGATAGATAGAGGTAATGATAGCTACTGGGAAGGATGGCTATGATAATTAACTGAGCATGTATATATAAAGCTACTAGAGCTACTTCTGACATATCAGTCCTCAGTAAATGTCAGTTACTGTTATTAATACTTTTGTTACTGAGTGACGGTACTGAGTGGGCAATTTTTGGTGGCCTTCACATCTGTCACCTGCAGAGACAAAGCTCAGGCATAATGTTTGATGACTGATGTTTCATGCTTGTTGTTTGATGATTGATATGAACAG
Seq C2 exon
GACCGCAAATAACCCTGTACAAAGAGGAATGGAGATTGCCTCTATCCACCTAGATTCATAAGCTGGCCTGAGGTGATCTTGGCATCAAGGAAGGGATGCACATCATCACACCATCAGCTTCAGAGAATGGCAGCCATTTATTTGTCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171469:ENST00000302851:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCCCAGGCCCTTTCTG
R:
ATGGCTGCCATTCTCTGAAGC
Band lengths:
352-1931
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains