HsaINT0187702 @ hg19
Intron Retention
Gene
ENSG00000180479 | ZNF571
Description
zinc finger protein 571 [Source:HGNC Symbol;Acc:25000]
Coordinates
chr19:38074872-38077646:-
Coord C1 exon
chr19:38077569-38077646
Coord A exon
chr19:38074999-38077568
Coord C2 exon
chr19:38074872-38074998
Length
2570 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TAATGGATTTGTTGTTTCAGTTG
3' ss Score
6.18
Exon sequences
Seq C1 exon
CACTGGCTTCTCTGGACTTTGCACACCTCCAGGAGAAGAACCCAGAAAATTGATCAGTTCTAAAAAACCATGCCCCAC
Seq A exon
GTGAGTTGCTGTTTCTTTCCTTCTTGAAGTACAATCATTTTGTTGTGTAATGTGAACACCAGATTTATCCCAGAATTTCCTGCCTTGTTTGGTTCCTTAAGGGAACTGCTTCCAAACGTCTCCCATTCTAGCGAGTAATAGTAGCAAAGAGCCCAATTCTTCTCAATGCTTTTCCCCTCTCCAAACAGTTTTCAGATATTCATTCAGCAGATAATTCTACATTGTCCACAGGCATAGTCTTCTGCCCAGAGCTCTGAGGGAACAGAAATACCTCCTTTTAAGATTGGTACACATTAGTACCACGGTTTGGTGAGGTAGAGATGAGTGTTTAAATGTGATACATGACAAAATTTGATCTTCTCTACAATCCTGGGTTTTCCATTTGAAAGTGATAGCATTTTTTTGTTGGATGTTCCTAGTCTCAGTGTGTGGCAAGATTTTCTGTGAAAGTTTGAAAATTGGTTGGGAATTGGGTTCTATGAAGGAAGGAGTCTTGTTGCTGATATAGTTTCCTGTTGCTGCCGTTACTAATAACCACTAATTTAGTGGCTTAAATCAATATAATTATGATTTATACCTCTGCTGGTCAGAAGTCTGAAATCAGTCTGAAAGGGCTAATATCATAGTATTAGCAGAGCCATGTTCCTTCTGGAGGTTCTAGAGGACTGGAGAATCTGTTTCCTTGTCCTTTTCTGGTTCTAAAGGCTGTCCACGATCCCTGGGGTGTGGCTTCCATCCATTTTCAAAGCCAGCAATCACATTTTGACTTGTGCTTTCATCATCACGTTTCCTTTTTTTACTCACCTGCCTCCCTCTATCACTTACAAATACATTGGGCCCAACCAGATAATCCAGGATAACCCCCTCTCAAGATCCTTAATTTAATTGCACTTCTAAAGTCCCCTTTGCCATGTAAGGTAAGGTATACATAGGTTTTGTAACGAAATTCAGGTCCAGACCACTTGTCACTTGAAAGTTTAAGAGATGAGCATTGGTGAAAGGATGGTTAGCTCTATTCAGGAATCCAACAACCCAGGGGAGGCAGTGAACTAGTGTTCAAAGACCGCCGAGTTCTGTCTCCATATCAGGGGTTTTTAAGGGAAATTAGAAAAAATGATGATCAAAACATTCTTGTGAAATGTGCAGTCTCAGGTCATTGCTTTGTTGGTCATTGCTTTCTTGGTCAGTGTTTTGTGGCCTTCTGTAGGTGCCATCAGCCTATTCTTATCAGGCTGGTCAGCCCATTCCCAGAGTTGTTAGTCTGCATATTTTAATTCTCTTATCTCTGTTGAAGGTCCTGTTTTCCTGAGACTGTTCTTACTGAATAATCTACAAAGTCAAGCAAAGTAATTATATTTAAGCAAGCAAGCTTTTCTTTATCATTGAGTCAGTACTGTTACTGTTTCAGGGATTAGGTTGTGGACATGTTTGGGGGGCCTTTATTCTGCCTTCTACAACCCTCTTGCCCAGGAACCAATGAGAGAGGATGATCATAGTCAAGTTCACCTTGGGATTTCCCGGAATGTACCAGTTCAGAGTGATGTCTCTGTGTGCCTGGACTGGCATCCAGTACCTTGCTATAGCCTAGGAACGTGGAAAATAGGAGCAAATAAAACATGCCAGATGCATACTCTCAAGAATTATAGATTCTAAGAGCTCAAAGACATTAGAGAATTTGTCTAATTCCTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTGGCCCAGGCGGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCCTCCAGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCACCATCACGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAAGCGTGAGCCACCGCGCCCGGCCGAGAATTTGTCTAATTCAGATACTCCCAAATAAGCAGATCATTTTGTATGTAAAATGGAAATATGTCCATTCTGTTCTGTGACATAATATAACTTGATGAATCTGAGTCTTCAAAAAATTCTTAGGTTATATTCAAATTTTATTTTCTAACCTAGAGATTTGGTAAACATTGTTTGGAAAAAAATTCATCTTTTTAAAAGTATTTAAAGGCAGAAGGGAGAGCAAGAACTTGTATTAATTGAGAGTATATTAGTTATTGAGGATTTGGAAGCCTTATCTGCTGTGCAATTAAAACCTGTTGTGAAGAAAACGCTTGCAGTATTTTCTTTAATCAAGAAACTGCACACATCTGGCTTTTTAAATTCTCAGACCTTTCTGGATAATGGAATTGTTCTATTGTACAGAGGAAGTTTTATCTGTGGCAATAGGAATGATAGAGAATCAGGTTAATACTACTGTTTAGGCAACCAATTTCCTGTTGTTTTGTGTTACTTGCTTCCTTCAATTACCTCCTCCATTTTCTTCTCATTTCACTTCAGAATCATTCCTGTAGAATCATCCTGTAATGGATTTGTTGTTTCAG
Seq C2 exon
TTGTTGGTGACTTTCAGGGATGTGGCCATTGACTTCTCTCAGGAGGAATGGGAATGCCTGGACCCTGCTCAGAGGGACTTGTACAGGGATGTGATGTTGGAGAACTACAGCAACCTGATCTCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180479-ZNF571:NM_016536:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)