HsaEX0073974 @ hg19
Exon Skipping
Gene
ENSG00000180479 | ZNF571
Description
zinc finger protein 571 [Source:HGNC Symbol;Acc:25000]
Coordinates
chr19:38054726-38085691:-
Coord C1 exon
chr19:38085642-38085691
Coord A exon
chr19:38077569-38077646
Coord C2 exon
chr19:38054726-38057193
Length
78 bp
Sequences
Splice sites
3' ss Seq
GGCTTCTTTTCCTTGTCCAGCAC
3' ss Score
7.47
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ACACTTACGCTGTTATGTCTTGACGCACGGAGCTTGTCTGCGCCGGCCAG
Seq A exon
CACTGGCTTCTCTGGACTTTGCACACCTCCAGGAGAAGAACCCAGAAAATTGATCAGTTCTAAAAAACCATGCCCCAC
Seq C2 exon
ACTTGGAATCCAGTTGTGTGACCAAAAAGTTATCTCCAGAAAAGGAAATTTATGAAATGGAATCACTCCAGTGGGAGAATATGGGGAAACGTATCAACCATCACCTTCAATACAATGGTCTTGGAGACAATATGGAGTGCAAAGGCAACTTAGAGGGTCAAGAAGCAAGTCAGGAAGGGCTTTACATGTGTGTCAAAATTACCTGTGAAGAAAAGGCCACTGAAAGTCATTCAACCTCTTCTACTTTTCATCGGATAATTCCTACCAAGGAAAAATTGTACAAATGTAAGGAATGCAGACAAGGTTTCAGCTACCTGTCATGCCTTATTCAACATGAGGAAAATCATAATATAGAAAAATGCTCTGAAGTTAAGAAACACAGGAATACCTTTAGCAAAAAGCCAAGCTATATTCAACATCAGAGAATTCAGACTGGTGAGAAACCTTATGAGTGTATGGAATGTGGAAAGGCCTTTGGTCGTACTTCTGATCTCATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180479_MULTIEX1-2/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGTCTTGACGCACGGAGC
R:
CCTTTGCACTCCATATTGTCTCCA
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)