HsaINT0187783 @ hg19
Intron Retention
Gene
ENSG00000197701 | ZNF595
Description
zinc finger protein 595 [Source:HGNC Symbol;Acc:27196]
Coordinates
chr4:53227-59449:+
Coord C1 exon
chr4:53227-53385
Coord A exon
chr4:53386-59322
Coord C2 exon
chr4:59323-59449
Length
5937 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGATAAATATGTGTTTTCAGGAA
3' ss Score
8.59
Exon sequences
Seq C1 exon
CTCCTGCGAGGGCTTGGTTTAGGGCTTCAGCTCTCTGCGTTCTCGGCTCCGGGAGGCCTCGGTGATTCAGCCACAGCCTCTGCCTCCCGTTGCTCTGTGACCTGAGGGTATTGGACAATTTGTAGCTAAGACTCCCGGATACCCTGAAGTCGGGAAATG
Seq A exon
GTGAGTGTGCGGGGCAGGGCGTCCGGAGGCTGGGGAGGCCTCGTCGGAACCGGCGGGAAATGGCGGCGGCGGGACCGAGTCTGCGAACGGAGTCCCCGCTGCCGCCTCTCAGACCTCAGTCCCCTCCGGTGACGGACCGGGCTCCTGTCGGTCCCCGCACGGCGGCTCTGGCCCAGCCTGCGGCCCTCCTTGTGCAGTTCTGCGCCCGCAGCCCCGCACCTTCCCTGGGCCGTGGGGTGAGGAGGAGCTCATCTGGAAGACGCCGGCGCCCGCGTGCGAGGTGCCCGCCTGGGAGGAGCTGTGGTCCGGGGGTCCGGTCCCTACTTTACCCTGTTCGGAATGAGATCGAGGCCCCATCGAAACAAAGTTCATGTGAGCAAACGGGGTCTCATTAATGGGACAGCGTCGGCCGCGGCTCCTGGTTTGGGGACTGCCAGCGGGTCTTGAAGGAAAGGCTTTTGTGAGGTGTGTGAGCAAGCGAAGCAAATCACCCGCCCGCTCCAACTATTCCACCAGTCCCTTTGCCCTGTGCACCTCCTCCGCGTGGCTGTTCCTGAGTAACATCTTTTAGAATACGCTGGTGTCGGTGCGCACGGCGCTTCTCAGTTCTGTGAGTAGTTCTGCCACATTGCTGAACTTGAGGGTGTGGGCGCCCCTGGTTTGTAGACAGGCGTTCAGAAATGAAGACGGGTGTCCAGAGGCAGGGACTGGCGTCTGCAGCGGGAGCAGTTGTGGGAAGAGCGCTGAGCTTGTGGGGTCTGCGCTGACTCTGGGTGGTGTCGTTAGTGAGTTGCTGGACACCGCGTTGGGGTTGGAGCATTGACTGGTGTTGAGGAAACTCCGCACGTTTTCTGTCAGAAGAAAGACATGGCTGAGCCTGGGCTGGAGAAAGATGCCTGGTGTCTGCGGGAGGCGCGGCCGGGTTCTGCATATGTGCTGTCCCGCTGGGCACTGTCCTTTTCCTCCAGGTCTCCTTCCGGGGAGAGAGGGGACCCAGAACAAAGAGGAAAGGAGTTCTGAGAAACATCCCTTCCCTGCACCCTGCTGCCAGCCCCCACCCAATGCTAGTCCACTCCTGAGCACGCCCACCGGGCATTCGCATTGCCCCACTCTTCCCAGTACAGGATTCCACCTCAGGAATTGTGCCCATGGCAGCTTTGCGCCTAGCGTTTTCTGCCAAAAACACACGCAGTGCCCAGAAGTCTCCTGGCTCATCTCAACCGCAGACCGGATCTACAGCAGGAACCTGCTTCCTTCACCCACCCAGGCTTCCGGACCACCTGATCCTAATCCCTTCTGTCTTTGTAGACATGGAATCAGAGCGTAGCCCTGCCTCGGCCTGTACCTGTGGCACAAACCAGTGCTTTAGTCAGTCCTGCCCTGCTCCCACTCATGGCTTTTTTTTTTTGAGATGGCGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTTACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTAACTCAGTCTCCCGAGTAGCTGGGATTACAGGCGCCCGCCACCATGCCTGGCTAATTTTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGAATGGTCTGGATCTCCTGACCTTGAGCCCTCCCGCCTCGGCCTGCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTCCCACCCATGGCTGTTGATAGCTCCTTTCTCTTCTGCTTTTTCCTTCCCCACAAATTCTCTTTTCTGTGTACACGGTGTGCCCAAGTCCATCCCTCAGGTGCCTATGAGAATTCAGACGTTAGTGAGTTCGAAACCAGGCCTTTTGGCCTGGCTGTTGTAGGAGCAAACACAAATTAGAAGAGGCTTAATGCTTTCTCTTTAGAACGAGGGAAGAATTTTTGCTCTTCTCCTTTTTCTTAAAGCATTTAGTTTGAGAACTTTTATATTTAAATATTTTCTCTGCTTCTTTGAAATATATGTAAATCATTTTTATCAGTTAAATAGGTCATTTGTCTTTTTTGGCTCAAAATTGTCTTCATCTGGGACCTGGGAACTATTGCTTTGAAATGTAAATAGCAAGAATATACACCCTATTTCACAGTTTCTGTAGGGGACTAGGAGGCTGACTTCAGCAGGTACCTAGCTCCACATTGCAAATCTACATCCTGTCACGAAGATGTGGATGTTTATTTTTTCTTTAATGATTAGAAAAAATTAGAAAACCCAGATGACCTCTCAAATTACATGATGAAATTATAATAAATTGTGTATGACAAATGGTGCTTTCAAGGCTTCTACTTGAGAACTAATTATGGTGACTTTCTGTGTTTGCATTTTCTTAGATTGCTTGTGATGCACATCATATTTTGGTTTAATTATACAACAAAACATTTTCTTGCAGTTCTGTTACTGTGGAGACTTTTTTAGGATTGCAGATGATTTTGCTTTTAGTTATATTTTCCACACACTGTCCAGAATTACCAGATGTTATACACAAAATGTCGAGCAGACTTCACTTGAGAAAACATTCTTTCTCAGGATTCCAGTCACAACCTGCAATTGTGCGGCAAAGTGCAGCAAAGTATTTCCTAAATCTGCAAACAGAATGGTCTCTCTCTTGGCATCTACAGTCCTTTCTAGAGCAGTTAAATTTCTACAAAAATAACTTTTCAGGACAGCAGTCAGTTATTTCACCGCCTTCAGTGCTCCTGGCATCTTCCGTTCTGACACTGATTTCAGAGATATGGGGCCCATAAACCTAACCAGATTCACACATACGCATCGATTAAACCTGAGAAATTCTGCTCCCTCCCACCTCCCCTTGCCCACATGCCCACAAACATTTGGCATGGGCCACATTGTGGCCCACAAACATAGCTCACCAGCCCTCCAAGACCTAAATGTGCAGTTCCAAATTCTGAATTTATGTCCTGAGATTTGATAAAAGAACTTTTATTTGAGAAATACAAGTTTTTAGATTTATCAGACCCAGAGATGTGTTAAAATGAGACCACACTCACATACTGTTCTCCTCCTTGAACTATTTGTCTTTTGAAATTGCTTGCTATTGCCACAAGTGGCTGTAAATTAACCTAATAATGCCACACTGGACACTATGACCCATACCCTATAGCTTAACTATGTATATGGCCAATCACTAACCAATGTTACTTCTATAAACCAATAAGAATTTCTGACACCTTTCTATCAATCTCCTCTCTGACTTCCTTTTTGCCTGTAAAAATATGCTTGTAACTGCTTCTAATTGGAGTGTATATTCAGGGCAACTTTATACTCCAGGATTGCAGTCTTCAAGCTTTGGCTCAAATAAACTCTCTACTTATGTTTACCCCAGCTTTTTCCCTTTAGCTCAAAATATTCTTTAGAATATGTTGAAGGAGGCTTCATGAGAAGGTCTTTCCTCTGATTTTACTCTGTTTCCTGTAACTCAAGAATGCAGCACACATTGATCTCACCTAGAATCTGCACATAAAAGCTGCTTCTGCCCAGGATTCACAAGACAGGGCCAGACTTTGGGTTGAAGAGATACAGAAAAGTCACAGAAGGTGTTTTCTGCATCATGAGAGGTCAGCATAGACATAAGCCCCACTTTCAGAGTGGAGCCCTTTGAGTTTTCCAGATCTTGTCCAGTGACCTGCTACAGCTGAGTAAGAGGCTTCTGGTGTGAACACAATACTGTGGCAGAATCTGTAAGTGTAAACAAGCACCTTAGCAGTGGGAAGTCAAGGCCACTAAATATCCAGAGCCATAATGCCAACTATGCCTCCCTGTGTTACTGGAGTAGAGTACTTTTTTCCTTCGCCTACCTCAGAGTTAGCTGATCAGGGACAGGGGATATCACATCCAGATCCAGGATCTGCAGCTCCATCAGGGCAGTTCCATTTTCTGTTTGCACCCCAGAAAGTCAGCCTGAGTCTCCTGCCTGGATCACTATGGGGGCATCAGCCCAGGGTCACTGGGGACACTCTCAGCAGCATCAGTGAGTATTTGAGACATTTGAGGATGTCCTGTGCAGACTGGGTCAGTGTTTCATATGGACATTAGAAAAAGAGATGAAATAGTCGTGGTCCCTACCATCAAGGAACTTGCATTCTAGAGCACATTAATAAATGATGGAATTCAGCGTCATGTATTCAGTACAAAGATGAAAACTGTACAGGAGACTTAAGCTTCGTTTGGGTTACTTCCCTTTTATTGTTTTGTGAGTTTTGATACCACCACCTGCATGGCTGTTTATGGACAGAAGAGAAGTCATTATTTGTATTGTTTTTGCCTTGCTAAGAATAAATATTTAACTTCAAATATAATTGGTCTGGAAAAACAAAAGGGTTTTGGTTAAATTCCTTGTTATTGTATGTTATAGATGGGGAAGTGGCAAAATAGATAAAAATTACACAAACTCTGGGAATCAAATTTCTTTTGGGCAGGCTTAGAAAAGACAAAACTGAAACTACTTAGTGGCCTAGAGAGCAGAAGCCTAGGGCCCATTTTCTGTCCCAACTTTGCCCAGATCCCCCCTCTACTGAACCTTGTCCAGGTCTGACCCCACACTGAAATACCTCACAGAACTGCTTAGAGAAGATCAGAGTTTGGAGTAGCTATTCCTACTGCCTCTCCAGAGCTGGTGCTCCCAATTTCCTGAAACACAAAAGCTGATAAATGGAGAAAGGCAATGTACTTTGAATTTAATGTACTTAAATTATTTTATGTAAAATTAAAACCAGTATTTCTAGAGACATCCCATCCAGCAACCTGTTCTCCATCTTTGCAGTTTCAGTGGATTTTTCACAAGTCTCAAAGTAACTATAAACACAAAAATAAAAAATTCCCGAATTGTACTTAAAACTTTCTTCTGTGTCTCTCCCATTTATCTACATTGAGCTATTATTCTATATATTTTTTAAAAATCAATGATAGGAAAACAGAAGAAAAAATAGAAATGCTGGGCCCTGCATTTAAATCCTGGGAAGTATCACACACTTTGTACCCACCTCCCAGGATGCTGTGAGAATTAACACACATAATGTGAGCTTCCCAGCACAGTGCTCTGTGACATACTCCTGAGCACATAGTACATGCTCCACAAATATCGCATTAATGCATGTGGATGTGCTGTTTTTCAAATGCAGACTTACTCAGACATTGCCACCATCTCCAGCCTCTGTAACCTTTAAAGGGCTTGCAGATAATGCCACGTTTCAGGATGTTGATTGCTGGTCTTGTCTTCGGATGAAAAGTATTTGTGTTGTGATAAGGGTGTTGGGGTAAGGGACTCTGCGTGCTGTGTCTGCTTTCTCTAGCTGAGTGGTACTATAACGGGTCTAGGAGGAGCATGAGCATTAATGGGAGACTTGGCTATAAAAAGCTGATTAATGGACCCTTTTCAAACCTGCAGAATTTTGTTACTTACAGTGAGGCCTAGAATACCAAATTTATGTGCACATTGAAGCTTGAGAGGCAATGTTTAGCTAAGTGACTCTCAGCCCAGTCTTCCAGTAGGATCACATGGCAGTTTGAAGAGAAACAGTCACCTGTTCCCTCCCCACAGATCCTGTTAAGTTTCTTGTGTGACATTACAGTGAGGCCAGGGTCAAGCATGAGGGCTTCCAGTTACTTTAATGAGACGTGAGTTCACCCTTTGTTCAAGGAGGTCACAGGACCTGCTTTGCTTGGTTTTGGTAGGGACAGATCAGTGTAGCCCATATTTCCATTGCAGCAACAAAAATTGCTGGCATGCCCTCCTTTTTCTTCAGAATTATACAATACTTTAGATAACATTACTGTGTTAAAAGTTATTTTATCAGATAATTCCAGTCAGCCCCATAAGTCACAACTAGTTCTCTGATTTCACTTATAGTCAAATTAAGAACTCTGTCACATGATAAATATGTGTTTTCAG
Seq C2 exon
GAACTCGTAACATTCAGGGATGTGGCCATAGAATTCTCCCCTGAAGAGTGGAAATGTCTGGACCCTGCCCAGCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197701-ZNF595:NM_182524:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)