HsaINT0187862 @ hg19
Intron Retention
Gene
ENSG00000176024 | ZNF613
Description
zinc finger protein 613 [Source:HGNC Symbol;Acc:25827]
Coordinates
chr19:52439281-52443588:+
Coord C1 exon
chr19:52439281-52439488
Coord A exon
chr19:52439489-52443461
Coord C2 exon
chr19:52443462-52443588
Length
3973 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
GCAGGACTCTCTTATTACAGGAA
3' ss Score
4.63
Exon sequences
Seq C1 exon
CCCACAGGTCCTGACTTCAGGAGCAAGACACTTCAAGTGAGGTGAGGAGGAGGTTCCAGGACCTGGATACCATCCTTTGCAGGGATGTAATTCACCAGAGACCAAGATTTCTAGCCAGAAATTGAGGGCAGCTCAAGGAGAGACTACAGACACAGCATCCTACTTACTGGCTATTTCCCAGTAACAAAAGAAAATGATCAAGTCCCAG
Seq A exon
GTGACTTTTTGTTTGTTTTAGTCTTTCCTTCATCACATGATTGATTTCTGGAAGACTTTAAAAGTCAGTTGAATTAAGTCAAAAAGTATAATTTGGTAAACTAGGATTTGTGCATCAGTAAATTTAGATTGTAATTTCAACATCTAGGCAAAGTAGGATCAGGACTATATTGTTTACATGTGGTATCATAGAAAGATACTTGGTCTTTGTCTGGCATAGAGCTCCTAAAACCCTTGGAATTTCCTGAATGATAAGGGTCTTTTTTTTGTTTGAGACAGGGTCTCACTTTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACCTCGGCCTCCTGGGCTCAAGCGATCATCCCATCTCAGCCTCCTAACTAGCTGGGAGTGTGTGCCACCAGGCCCAGCTAACTTTTTGTATTTTTTTGTAGAGATGGGGTTTCACCATGTTGCACAGGCTGGTCTCTAACTCCTGAGCTGAAGCAATCTGTCTCCCTTGGCCTCCCAAAGTTCTGGGACTACAGTTGTGAGCCACTATGCCTGGTCCTCTTTTTTTGTAGTGAAACTACTCTCAGTGGACCCCTAGGTAGCTTCAGTATGGAGGCTGGTTGCCAGAAATAACAAGCCTTGATTAGAAGCTTGGAACTTTCAGTACTACCTCTAATCTCCAGGGAGCAGAGAGAGGCTGGAGATTGAGTTCAGTCACCAGTGGCCAATGATTTATTCAACCATGCCTGTGTAACATAAAAACCCCTAAACAGCAGGGTTTGGAGAGCTGGGTTGGTAAACACATTGAGGTGCTGGGAGGTTGGTGTGTGCAGAGAGAGCATGGAAATTTATGCCCATACACCACCATACTGTGCCCTGTGCAGCTTTTCCATTGGGTTATTCCTGGGTTGTAAATAAACCAGTAATAGTAAAGTGCTTTCCTGAGCTCTGTGAGTTGTTCTAGTAGATTATTGAACCTCAAGGTGGGTTGCAGAAATCCCCACATTTGTAGCCAAGGGACAAAAGTCTTTGTAACCTGGGGACCTCACACTTGTGACTGGTGTCTGAAGTGAGGTTGGTCTTGTGGGATTGAAACCTTAACCTATGGGTCTTCCAGGAGTTGGTGTCAGAATTGAATCTAATCGTTGGACACCTATTGGGTGTTAGAGAATTGGAGAATTGGTTGATGTGAGCAAAAACCCACACATTTGGTGTCAGAAATGTGAGTAAAAACAGCACAATGGAATTCACACAAAATGACTAATGTTGGAACCTAATGTGTGACCGGAGCATCCTGTGGGTTATAGTAGCTGTCACCTTCTGTCTAATGTCTCTGACTGTCATCACATCCAGAGAGTCCTTGGTCACAGGATATGCACTGACTCTCAGGAGAAAGCAGACCAGTTCCCGAGAGGTGTCACTATTAAATGCACTTAGGTCCCAGGACAGTTTTTAGATGGTTCTTCCTAGAGGTGGTGTGACAGATGATGTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTTGAGATAGAGTCTCACTCTGTCATCCAGATTGGAGTGCAGTAGTGCCATCTTGGCCTACCACAACCTCTGCCTCCCAGGCTGAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGCATGCACTACGACTGCCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAATGATCCTCCCACCTCGGCCTCCCAAAGTGTTGAGATTACAGGCATGAGCCACCACGCCTGGCCCCGAATATAAATGCCATAAGCCCAGCCTTCTCATACATGCCAAAGCACAGGTCCTCAGAGACCTTTTTGGGAAGAGGCCAAAGGAACTCAGAGGACACAGTTCAGGGGTCCAAGGCAAGGTTACCCAAGGACCCAGTCTTATGGCTGGTAGGGTCATCCAGGAATAAAACCTGAAAGGCTGAGGAAAATGGAAAGATTGCACAACTTTCTTTTTTTATTCTTTTTCTAAATTTTTTTTTCATTTTTCTTCTTTTTCTTTTCTTTTGAGTTTCACATTGTCACCCAGGCTGGAGTGCAGTGGTGTGAACATGGCTCACTGCAACCTCGATTTCCTGGGCTCAAGAGATCCTTCTGCTTCAGCCCCTCAAGTAGCTAGGCATGTGCCACCACATCCAGCTGATGGTTGTATTTTTTGTAGAGATGGGGTTTTGCCATGTTGCCCAGGCTGGGATTGCATGACTTTCTAAGGTTCTCTGTATGAACAGGTGGCTGACTTACTGTTTGAGACAGGATTGGCAGTAGGGAGTTGAAAGTACTGTTGTCTGGTAAGGGAATGGGTTGTTGGGATCCAGAGGGTTTGCTTTACAACATCCCCCTGTGTAAGATTGTGCACATTCTTTTTCCATGTTCAAAGCCAGTTCTTACACCCTCATCCTTTAATACGTTAAAAAAAGTAAGTATATAAATGTACATGGATATATATATATATATATATATATATGTGCAATATGCTGTATAGGTTTATAGTCTGGGAGCAATAGGCTATACCGTAGAGCCTGGGCATGTAGTAGGCTGTATCATCTAGGTTTAAGTAAGTGCACTCTGTGATGGATGAACAACAGAATTGCCTAATGATGCATTTCTCAGAATGTATCCTTGTTATTAAATGACACATGAATAAATAAATATACATGTATACATGTTTGCATATATTTGTATGTATGTATATATATGTATATATATTTACAGACGTATCTGCCTTAGCCCTTAGATCTTTGGATAGTACCTTTCCATTATTGTATTTTCTCTTTCACAAACTAAATTGGTACATGCTAGACCTTACCTATCCTCTGTATTTATTAATCTGGTCTTTTATATATTGCATCATTCTGTCCTTTTGTTGCATTTTTGGTAGTTTTTTCAGATCTACTTACCAGTTCATTGACTATCTCTTCAGTTATGCTGCTTACACGCCTGATAACATAAATATAAATACTTCAAAACCCATATGTGTGTGTATGGTTTTTGAATAATATTTTGTATTTTCTTTTTTATTATTTATTTATTTATTTTATTTTTATTTATGTATTTATTTTGAGATGAAGTCTCGCTCTGTCACTCAGGCTGGAGTACAGTAGCATGATCTTGGCTCACTGCAACCTTTGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGTCTCCCGAGTAGCTGGGATTACAGGCATGCACCACCATGCCTGGCTAATTTTTGTATTTTTAGTAAAGATAGGGATTTCACCATGTTGGGCAAGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCGCCTAGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCTGGCCTATTTATTTATTTTGTAAGCCAGTCACATTTAGCAGTAGGGGGTAATAATACTTAATTGTCTCTTGTTCTTTGGACATGTTTTGGAAAGAGTCTTTTACTCCTCCTAACATATAAAATATACTTATTTATTATGTAGTATCTTGTAGTGTTTGGGGTTTCTTCCTGGTTGATTCTGGTAGCGCACATGAAGATTCATTGAAGATTCATGATGAATAAAGAAGTATGCTTTATTCATCCTGATATTGCTAAAATATATTTAGTGCCTGGCAAATAGGTGCTCAAAAAAAAAAAGAGGATTAGCAAGAGGATTAAATGATTGGTTCTTATAGAAACTTCTGATTTGTTAAATGATAGATAATTACACAATTACAGAATATTTTGCTAGAGATAGATTTTGAATATAGATAGATTTTGGAGATGGATTTTTGCCTCTATGACAATGTATTTTTTTAAAAATCACAGCACCTAGATATATAGATGCAGACTATTTGGTAAAAATGAGCAGAACAATGTTCTTCACATTTCTTCCATATAAATGAGAGAAATACTTCATATTAAGCAGGACTCTCTTATTACAG
Seq C2 exon
GAATCACTGACCCTGGAGGATGTGGCTGTGGAGTTCACTTGGGAGGAGTGGCAGCTCCTCGGCCCTGCTCAGAAGGACCTGTACCGAGACGTGATGTTGGAGAACTATAGCAACCTCGTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176024-ZNF613:NM_001031721:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)