HsaINT0187971 @ hg19
Intron Retention
Gene
ENSG00000167528 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:31834]
Coordinates
chr12:48741690-48744674:-
Coord C1 exon
chr12:48744569-48744674
Coord A exon
chr12:48741899-48744568
Coord C2 exon
chr12:48741690-48741898
Length
2670 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTGATATGAATTTGTTCCAGGTC
3' ss Score
8.64
Exon sequences
Seq C1 exon
GCTGGCTCCGCCGGCCGCCGGCTCCCAGACGCAAGCGGAGGGCGGAGGGGAGGGGCAGGCGGCGCCCGGGAGGGAGGCACCGGGCCGCGGGCCAAGCCTACCGGGG
Seq A exon
GTGAGTGGAGCCGGGCCGGAGGGAGCTGCGGCTGGAGGGAGGGACGCCTGGCTTCCCGGGGCGGCTGGTGGGGGCTCGGTCACCCATAGGGGCTGGGAGGAGGATCGGCGCGTCTTCCGGGTTGCTGCCTTTCCCGGGGGTCTGCCCCGCTGACATTCTGTGCCCGCCTCTCGCCCTGTCTCCCCGTGCCCATCGCAACTGTCAGGCCCTGCGGGCTCCCGCCGCTGTCACTCGCGCACAGGTTACCCCGTGGCTCCCTTTCTCTTCACTTGCTCATGCCCCAGCTCATGGGAAACCTGTTTTCTGACCTCACTTCCCCTGCTCCAGTTCTGCCTTGCTCGGATTCTCTGAAATCTGACCCTTTCCAGGGGCACTGTGACAAGAAGAAGGGAAGAAGCAACCTTACCCCTGAGCAGGCTCCCGTCCCGCCCATGCCCTACCCGTGGCAGGGGCCAGGGTTCTCTGATGGACGGAGCCAACTCGTCCGTGTGCCCTTGGGCTACTCATTTTTATAACATGGCCCCTTTTCTGTTCATCAGCACTGGCTGCAGAAACTTCCTTTTGCAGGTCCCTTGCTACCCATATGTGTGAAGAAAAGGGGGAAATGAAAGCCCTAGAACCCACACTGCAGTGGGCATGGGATCATCCTGGAACCAGGAGAAACGAGGTTAGGGCTACCACCTTAACCGCCCAGGTGCTGGCTCTGCGTGAATATCTTAGGAAATGCAAGCTGAGGACAGGTACCCATCCCATCCTTTGCTGAGATTTTTGCTAGCACTTCCACGGATTTCTGTCAGTGGTATAGAAAAACTTACAGCTGGCCCAATGGGCTCTGCACAAAGAGGCTTCCCATTAAGAGACTCTGCTACCTGGGGGAGATGGAGAAAGGGTTTGAGACAAGTGTCCAGATATGTAGCTAGAGGTAAAGCCTTCAGGGAGGATTTGCACAGGAGCTAGAGAACCAGAAAGATGGGACGAAGAGGGAGAATTAGTGCCCTGTGTGTTAAAAGTGGATACAGAGCTGGAATTCAGAGAAGAGAGCTAAAATGGAAGTTTCCCTTTATTGCTTTAGCAAGAATTTTCCTTTCTCATGAAAAGTCTCTGAAAAGGAAACCTCCTAGGCTGGGAATCAGTCCAGGGTGCTCCCATGAGGCCCTGAGCCATCTTTGGACTTCTGAGATAAAAAGGGAATTTGTTTTTCCTGTGCATTGGGCTTAGGGTTCCCACCTACCTCTTTTGTCAAAGACAAATAGGCAAGAAAATAGACGACTTGACATCTGTGATTACCTACCCTGGCCTTCAAGGTTCTTGCAAGTGTTATTGAAAGGATGTAAGTAAGCCAGGATAGTTACCAAGTTTCTGACTGCTCTTGGAAGCCTTTCACTGACTCTGACTGTTTGGATATTGAATAAGAATACCCAAAATATGTTGCCAAACAGAAAGAGATTCTGAGTCTCAGATTATTTCTCTGCCATAAAGCCCTATCACAACAGAAGTGTGACCCATCCTGCTCTTAAGTTGTCTAAAGAAAAAGAAGAGCCCACTATCTGGTATTGTACACTGCAGGATTATTAAGAATTAAAAAAAAATAACCTAAATCTCTTCTCTTGCAATCAAGACCCATTTTTTTCTGTTTGACCTATATAGAGATAGAAGGGACCTCTGTTTTTATTCATTAGTAGCATCATTCATCAGCCTTCTTCTCCAGACAGAGAAAACTACATCCGACATTTTTAACTTTCCCAGTGGCTGTATTTCCAATCCCTTTCTTGACTTTGATGTTTTCTGATGAACACACACTGGCTTCACCATACGCTTCTTTCAAACTGAATATATTTTTCTAATGAGATCTGACTGGTGCCTGACAAATAAACAGGTTTGTTCTTCTGGGTCATGTTAGCAGCAGTTCTTCCCCCCTTTTCCAGCTCTGGTTCAAACTCTTTCTGTTCCTTTTTACTTTTCCTGATTAAACTTCAGCTCCTCACAGACCAACAATTTCTCTTACCTCTTAGGATTACTTTGGAGTCTTAACACCTGCTTTCCAAGTTATCAGTTTTTCTACCATATTTACTACCAGTTTTCATTGGATGGTAGACCAAGTGCCTTTTTATTGAGGCTTGTCCCAAGTGAGGTACCTTTTGGCCCAGCCTCATGATACAAATACGCCCCTTGGTTGGGACTTTTACCTATAGTAATCATTTCATTCTAAACTGATGAGACTGTGATTTGTGGCAGAAAATCTTCTGTGTGATTACATCCATCTTGTTGAGTGCAGGTCTATATGTATTTCTTCCTGTATGTTTCCAAATTGCTTACTTTCCTGTACTTCATGTGCTTGAAATTAAATGGATAGCCTTTGAATTTCCAGGACAGTTCTTTTTTTTTAAATGAACTTCTTCTAACCTTCAGGTATATTCTGTTTCTATAATGAGGTCCACAAAATACCAGTTAGTGGCTTTGCTACGTAGCACCTGCCAATTTCTTAGTTCCTCCAAGAAGCTTGGTGCAGGCTCCGTTGATCGGAACACATCAAGCTTTTAAAGTTCATCTTCCAGCAAGCTCCTCCTATCTAGTTTTGTCTATTATCCCTGGGCCTGTTCTTCATAACTCCCTTAGAAATATCACTCCTTTCCCATTTTCATGGGCATTGCTGATATGAATTTGTTCCAG
Seq C2 exon
GTCACAATTTGGGTCTGCAGCAGAAATGCTTTCAGAACAGACAGCAGCGCTGGGGACAGGATGGGAATCAATGAATGTACAGCTGGATGGAGCAGAGCCCCAGGTGGAAAGGGGAAGCCAGGAAGAGCGGCCATGGAGAACAGTACCAGGACCTCTGGAGCACCTGTGCTGTGACCTTGAAGAGGAGCCACAGTCCCTTCAGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167528-ZNF641:NM_001172681:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.895
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)