MmuINT0179628 @ mm9
Intron Retention
Gene
ENSMUSG00000022987 | Zfp641
Description
zinc finger protein 641 [Source:MGI Symbol;Acc:MGI:2442788]
Coordinates
chr15:98124051-98126514:-
Coord C1 exon
chr15:98126486-98126514
Coord A exon
chr15:98124260-98126485
Coord C2 exon
chr15:98124051-98124259
Length
2226 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CACTTCCTGACTTGTTCCAGGTC
3' ss Score
8.37
Exon sequences
Seq C1 exon
GGGAGGTAACGCCAAGGGGCCGAGCCGGG
Seq A exon
GTGAGTGAGGCTGGGGTGCGGGCGGGCGTGGAGGAGGGCACCAGCCTGGCCGTGGGAACAGTGGCGTCGGTGTCGCATGCCTGGTCCCGCCGCTGTCACTTGCGTGGGCGTCCCCGCAGCACCTTTCTGTCACTTGGTATAGCCCCTGCTCGCGGGAACCTGTTTTCTAGTCCCACTTAGCCAGTTCCCGAGTCTTCTGAAATCTGACCCTCCCGGGGGTGCTGAGTCTGACTCAGAAGAAACCTTATTCTGCTGTGGGCTCGGGGCCCAAGGTGCCACACCCGCGATGGCAGGGCCACTGAGCCACTCTTCGTCCCTGTGCCCTTGGGCCACTCTTTGATACTAAGGCCCTGTCTCTGTCCAAAAGAACTCGCTGAGAAAAAAAAAAAAAAAAAAACTTCAGCAGGTGCCCTGCCTCCCAGATACATAACCAGGCAAAAGAAATGAAAGCCCAAGAACCCAGGCTCCAGCAGACTTGGGATCATCCTGAACTAGGGACAAGGAAAGATAGAAGACAGGTTAAGGTGGGAGCCCAGGTGCTGGCCCTGCCAGGAGCACCCTAGGAAATGCAGGCAGGTGACAGTGATCCATGCCATCCTTTGCTCCCGGTTCCCCCTAACATTTCCACAGGTTTTCTGTCATCCAGCTGGCCCAGTGCGCTCTGCAGAATCAGGCCAGGGTGTATCCCTGAGGCCCCAAAGCCATCTTTGAGCTTCAATGATGGAAGAGGAATTTGTTCTTTCTGTACATTGTAACTGGCCTGGGGTCTGCTGTAGCCTTTCCCAGCCTCCTGGGTTCCTGCAGATGTTACTGGATGATCCTGTGAGCTAAAATAGCCCTGGGATTCTGTATATGAGTACCCTGTCACTGTCTTCAGGCACACCAGAAGAGGGCATCGGACTCCATTACAGACGGTTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCATTGTGCCATCTCTCCAGCCTGCCCCTGAAATTCTGACTTGTTCTAGGGAGATTATTGGTCGCTCCGTCTACATAGAAAGGGAATAAAAATGACAGACATGGATTGCCACGCAGTAAGTTGTTCCACAGTCATTATCAAATGGGACCTGTCTTGCTCTAGGATTGTTGTGGACTCTAGAAAACAAACAGAAACGAACAAATACTAGCCTAAGTCTTTCCTGTGATCAAAACCATTTATTCTGTTTGATACATAGACATATTTACAGGTGGCCTGACTGGCCGACCCTCTGTTGCTTATCAAGCCCAAACTATGTCTGTTGGTTTAGCTTTTCCAGAGGCTGGGTTTCCTGCCCTTTTCTTGATTCGAATCTCTTCCTGTGAACAAACACTGGCTTCCCCATACCGTTCTTGAAGTTGGATATATTCTTTGTAAGGCACTGTGACCGGTGCCTGTCACACACTTCAGCCCACAGGGATGCTTATTCCCTGTCACACTGTATGAGTGACGCCACCTTCCAGCTTCCCAGGGTCTCTCCACATGCTGATCTTTCCATGATCTCCTTTAAACTTTGGCTCTGCACTGACCTGCAGTTCCAGCCCCCTGTCAAGGCTGCGTTGAGTGCTTACAGCTTGCTTTTATAGCTGTCTACTTTACGGGTCTTTCTGCTGGGTTTTTATCAGTTCTCATTTCCTACATAAGTGTGACAGATCATGGGTCCCTTCACTGAGACTTAAGGGAGGGCTATCTGGTTCAGCTCGAGAGAGACAGCAGGTACTCACAGGTCACCCCCTGCCCCGGGTGGGACTTCTACATCAGTTGGTGAAAATGTAATGTGAGGCATAGAATCTTCAGGTATAACAGCATCCATCTTTGTTGAGTGGATTCCTTCTTGTGTTCTCAACGACTTTGCTGCGCCTTGAGTGATTTTGATACAGTGGAAACCCTCTGGATCTTCAGGATTGGACTAATTGTGTTTTAAAGTGAAGTTTCTTGCAGTCCTGGGTGAAGGTCTGTTGATAGTGTGAGGCCTTCGAAATAACAGGGACTTGACTGTGTGGCGCCTGTCAGTTCCTGAGCTCCTCCTGGAAAGCTTGGCTCACACCATGTTTGGTAAGCTCATCTTCCATGGGGCTCCTTGGACCATTTCCTGTCCTTAGCCTTAAGAGCTGTTCTCTGAAGCTTCCTTGGGCATATCATCCTCATCCATGATAGAAGAGTGCATCACTTCCTGACTTGTTCCAG
Seq C2 exon
GTCACAGTGTGTGCTTGCTGCAGACATGCTTTCGGAACAGGCTGTAGGCCTGGGCACGGGATGGGAGCCAATGAATACACAGCTGGATGCGGCAGAACTCCAGTCAGAAAGAGGGACCCGGGAAGAGGGCTCGTGGAGAACAGCACCAAGGCCGCTGGAGCACCTTCACTGTGGTCTTGAAGACGAGCCACTGTCCCTTCAGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022987-Zfp641:NM_173769:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.887
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: