HsaINT1047597 @ hg38
Intron Retention
Gene
ENSG00000167528 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:HGNC:31834]
Coordinates
chr12:48347907-48350771:-
Coord C1 exon
chr12:48350046-48350771
Coord A exon
chr12:48348116-48350045
Coord C2 exon
chr12:48347907-48348115
Length
1930 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CTGATATGAATTTGTTCCAGGTC
3' ss Score
8.64
Exon sequences
Seq C1 exon
GCCGGAGGGAGCTGCGGCTGGAGGGAGGGACGCCTGGCTTCCCGGGGCGGCTGGTGGGGGCTCGGTCACCCATAGGGGCTGGGAGGAGGATCGGCGCGTCTTCCGGGTTGCTGCCTTTCCCGGGGGTCTGCCCCGCTGACATTCTGTGCCCGCCTCTCGCCCTGTCTCCCCGTGCCCATCGCAACTGTCAGGCCCTGCGGGCTCCCGCCGCTGTCACTCGCGCACAGGTTACCCCGTGGCTCCCTTTCTCTTCACTTGCTCATGCCCCAGCTCATGGGAAACCTGTTTTCTGACCTCACTTCCCCTGCTCCAGTTCTGCCTTGCTCGGATTCTCTGAAATCTGACCCTTTCCAGGGGCACTGTGACAAGAAGAAGGGAAGAAGCAACCTTACCCCTGAGCAGGCTCCCGTCCCGCCCATGCCCTACCCGTGGCAGGGGCCAGGGTTCTCTGATGGACGGAGCCAACTCGTCCGTGTGCCCTTGGGCTACTCATTTTTATAACATGGCCCCTTTTCTGTTCATCAGCACTGGCTGCAGAAACTTCCTTTTGCAGGTCCCTTGCTACCCATATGTGTGAAGAAAAGGGGGAAATGAAAGCCCTAGAACCCACACTGCAGTGGGCATGGGATCATCCTGGAACCAGGAGAAACGAGGTTAGGGCTACCACCTTAACCGCCCAGGTGCTGGCTCTGCGTGAATATCTTAGGAAATGCAAGCTGAGGACAG
Seq A exon
GTACCCATCCCATCCTTTGCTGAGATTTTTGCTAGCACTTCCACGGATTTCTGTCAGTGGTATAGAAAAACTTACAGCTGGCCCAATGGGCTCTGCACAAAGAGGCTTCCCATTAAGAGACTCTGCTACCTGGGGGAGATGGAGAAAGGGTTTGAGACAAGTGTCCAGATATGTAGCTAGAGGTAAAGCCTTCAGGGAGGATTTGCACAGGAGCTAGAGAACCAGAAAGATGGGACGAAGAGGGAGAATTAGTGCCCTGTGTGTTAAAAGTGGATACAGAGCTGGAATTCAGAGAAGAGAGCTAAAATGGAAGTTTCCCTTTATTGCTTTAGCAAGAATTTTCCTTTCTCATGAAAAGTCTCTGAAAAGGAAACCTCCTAGGCTGGGAATCAGTCCAGGGTGCTCCCATGAGGCCCTGAGCCATCTTTGGACTTCTGAGATAAAAAGGGAATTTGTTTTTCCTGTGCATTGGGCTTAGGGTTCCCACCTACCTCTTTTGTCAAAGACAAATAGGCAAGAAAATAGACGACTTGACATCTGTGATTACCTACCCTGGCCTTCAAGGTTCTTGCAAGTGTTATTGAAAGGATGTAAGTAAGCCAGGATAGTTACCAAGTTTCTGACTGCTCTTGGAAGCCTTTCACTGACTCTGACTGTTTGGATATTGAATAAGAATACCCAAAATATGTTGCCAAACAGAAAGAGATTCTGAGTCTCAGATTATTTCTCTGCCATAAAGCCCTATCACAACAGAAGTGTGACCCATCCTGCTCTTAAGTTGTCTAAAGAAAAAGAAGAGCCCACTATCTGGTATTGTACACTGCAGGATTATTAAGAATTAAAAAAAAATAACCTAAATCTCTTCTCTTGCAATCAAGACCCATTTTTTTCTGTTTGACCTATATAGAGATAGAAGGGACCTCTGTTTTTATTCATTAGTAGCATCATTCATCAGCCTTCTTCTCCAGACAGAGAAAACTACATCCGACATTTTTAACTTTCCCAGTGGCTGTATTTCCAATCCCTTTCTTGACTTTGATGTTTTCTGATGAACACACACTGGCTTCACCATACGCTTCTTTCAAACTGAATATATTTTTCTAATGAGATCTGACTGGTGCCTGACAAATAAACAGGTTTGTTCTTCTGGGTCATGTTAGCAGCAGTTCTTCCCCCCTTTTCCAGCTCTGGTTCAAACTCTTTCTGTTCCTTTTTACTTTTCCTGATTAAACTTCAGCTCCTCACAGACCAACAATTTCTCTTACCTCTTAGGATTACTTTGGAGTCTTAACACCTGCTTTCCAAGTTATCAGTTTTTCTACCATATTTACTACCAGTTTTCATTGGATGGTAGACCAAGTGCCTTTTTATTGAGGCTTGTCCCAAGTGAGGTACCTTTTGGCCCAGCCTCATGATACAAATACGCCCCTTGGTTGGGACTTTTACCTATAGTAATCATTTCATTCTAAACTGATGAGACTGTGATTTGTGGCAGAAAATCTTCTGTGTGATTACATCCATCTTGTTGAGTGCAGGTCTATATGTATTTCTTCCTGTATGTTTCCAAATTGCTTACTTTCCTGTACTTCATGTGCTTGAAATTAAATGGATAGCCTTTGAATTTCCAGGACAGTTCTTTTTTTTTAAATGAACTTCTTCTAACCTTCAGGTATATTCTGTTTCTATAATGAGGTCCACAAAATACCAGTTAGTGGCTTTGCTACGTAGCACCTGCCAATTTCTTAGTTCCTCCAAGAAGCTTGGTGCAGGCTCCGTTGATCGGAACACATCAAGCTTTTAAAGTTCATCTTCCAGCAAGCTCCTCCTATCTAGTTTTGTCTATTATCCCTGGGCCTGTTCTTCATAACTCCCTTAGAAATATCACTCCTTTCCCATTTTCATGGGCATTGCTGATATGAATTTGTTCCAG
Seq C2 exon
GTCACAATTTGGGTCTGCAGCAGAAATGCTTTCAGAACAGACAGCAGCGCTGGGGACAGGATGGGAATCAATGAATGTACAGCTGGATGGAGCAGAGCCCCAGGTGGAAAGGGGAAGCCAGGAAGAGCGGCCATGGAGAACAGTACCAGGACCTCTGGAGCACCTGTGCTGTGACCTTGAAGAGGAGCCACAGTCCCTTCAGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167528:ENST00000544117:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.906
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGTTCTCTGATGGACGGA
R:
TTGATTCCCATCCTGTCCCCA
Band lengths:
358-2288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains