RnoINT0168532 @ rn6
Intron Retention
Gene
ENSRNOG00000032447 | Zfp641
Description
zinc finger protein 641 [Source:RGD Symbol;Acc:1310412]
Coordinates
chr7:139905236-139907640:-
Coord C1 exon
chr7:139907594-139907640
Coord A exon
chr7:139905445-139907593
Coord C2 exon
chr7:139905236-139905444
Length
2149 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CCGTTGTTGACTTGTTCCAGGTC
3' ss Score
8.18
Exon sequences
Seq C1 exon
GGCTCGGCCGCGCCGGGCGGGAGGCAGTGCCAAGGGGCCGAGCCCGG
Seq A exon
GTGAGTGGGGCCGGGGTGCGGGTGGGCGTGGAGGAGGGCGCCAGCCTGACCGTGGGGACTGTGGCGTCGGTGTCGCAAGCCCGGTCCCGTCGCTGTCACTGGCATGGGCGTCCCCGCAGCACCCTTCTGTCACTTGCTATAGCCCCGGCTCGCAGGAACCTGTTTTCTGGCCTCACTTAGGGAGCTCCAGAGTCTTCTGAAATCTGACCCTCCCCGTGGTGCTGTGACCGGGAGAGAAGAAATCTTACCCTGCTGCGGGCTCAGGGCCCGAGGTGCCACACCCGTGGTGGCCCGGCCACTGGGAACCACTCTCGTCCCTGTGCCCTTGGGCCACTTTTTGAAACCAGGGTCCTGAGACTGTCCATAGAACTTGCTGCAAAAAAAAAAAAAAAAATCAGCAGGTGCCCTGCCTCCCAGATACATAAGCAGGCAAGAAATGAAAGCCCAGGAACCCAGGCTCCAGCGGACTTGGGATTGTCCTGAACTAGGGGAAAGGGAAAAAAGAAAACAGGTGAAAGCTGAAAGGCCAGGTGCTGGCCCTGCCTCGAACACCCTAGGAAATACAAGCAGGTGACAGTAGCAGGTGACATCCTTTGCTCGGTTCCTGTTAACATCTCCACAGGTTTTCTGTCCTCATCCAGCTCGCCCAGTGTGCAGACACATTTCCCATGGAGGACTCTCCTCTGAAGGAGGTGACAGGGAAGTGGGTTGAGACAGGTGTCCCAGTACTAAACTGGAGAGGAAACTGCTGGAGGGCCTGCCTAGGCAGCGAGGGAATGAGGGGGACTGGAGGTGCAGAAGGGTGATTGGTGTCCTGCGTGTCTAAAAGTGAGAAAGGGCACAGGTGCTGAAATCCAGAGGAGAGCTAAAATGGAAATTCCACTAAGTGCTGCCTTACCCTCTTTCCCTTCCTCTCCTAACACCACCCAAGCTGGGAATCAGCCCAGGATGCCTCCATGAGGCCCCAGAGTCATCTTTGAGCTTCAACAGTGGGAAGAGGAGTTTGTTCATTTAGTACATTGTTCTTAGAAATCTGTTGTCACAGGCAAATGGACCAGGAAGTAGCTGGCCTGGAGCCCTTCCAAGCCTCCTGGGGTCTTGCAGATGTTACTGAATGATCCTGTGAGTCAAAACAGCCCCTGAAATTCTGACTTGTTCTAGGGAGATTACTGGTCGCTCCGTCTACATGGGAAGGGAGTAGGAATGACAGAAATCCATTGGCACCATGGTTCTACCATGGTTGTCAAATGGGTCCTGTCTTGTTCTAGGACTGCTGTGGATTCTAAAACAAACCCTAACCTAAATCCCTTTCTTGCGATCAAACCCCATTTATTCTGTTTTATGGGTGGCGTGACTGACCGGCCTTCTGTTGCTTGTCAAGCCCAAACTATGTCTGCTGTTTCAGCTTCCCTTTCTTAACTCAAACCTCTTCCCGTGAACAAACACCGGCTTCCCCATGCCATTCTTGGAGTTCGATATATTCTTTATAAGGCGCTGTGACTGGTGCCCATCACGTACTCCAGCCTCTAACGTTGTGTTAATAATGCCGCCTTCCCGCTTCCCACCACTTCTCCACGCTCTGATCTTCCCACCATTCCCAATTAAACTTCAGCTCTTCACCGACCTGCAGTTTCTGCTCCCTGTCAGGCCTGTGCTGGGTACATCCAGCTCGCCTGTGTAGCGGTCCAGGTCACTGTCTTTCTGCTGTGTTTGTCTCAGTTCTCATTTCCTATGTAGGAATGACAGGTCATGGGTCCCTTCACTGAGACTTAAGGGAGGGCTATCTGGTTCATTTTGAACAGGTACTTAGGACAGGTCTACCCCCTGGGTGGGACTTCTACACCAGTTGATGAAAATGAAATCTGAGGCATAGAATCTCTCGGTATGTTCGCACCCATCTTTGTTGAGTGGATTCCTTCCTGCATTTTCAATGAATTCGAGTGAGGTCTGTTTATAGCGTGAGGCCTTTGAATACCCGGGACCTGACTGTGGATCACCTGTCGGCTCCTGAGTTCCTCCAGGAAAGCTAGGCTCACACTGCCTTGTAAGCACATCTTCCACGGGGCTCCTCTGCTTCCTGTCCTTAGCCTTGGGAACTGTGTCTCATCCTCTTCCATAGATGAGTAGATCCGTTGTTGACTTGTTCCAG
Seq C2 exon
GTCCTAGCGGGCACTCACTGCAGACATGCTTTCGGAACAGAGCGTAGCCCCGGGTGCAGGATGGGAGCCAATGAGTGCACAGCTGGATGCAGCGGAACCCGGGTCAGAAAGAGGAGCCCGGGAAGAGGGCCCGTGGAGAACAGCACCAAGGCCGCTGGAGCACCTTCACAGTGGTCTTGAAGACGAGACACTGTCCCTTCAGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032447:ENSRNOT00000045473:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]