HsaINT0187977 @ hg19
Intron Retention
Gene
ENSG00000167528 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:31834]
Coordinates
chr12:48741690-48744001:-
Coord C1 exon
chr12:48743829-48744001
Coord A exon
chr12:48741899-48743828
Coord C2 exon
chr12:48741690-48741898
Length
1930 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CTGATATGAATTTGTTCCAGGTC
3' ss Score
8.64
Exon sequences
Seq C1 exon
GTCCCTTGCTACCCATATGTGTGAAGAAAAGGGGGAAATGAAAGCCCTAGAACCCACACTGCAGTGGGCATGGGATCATCCTGGAACCAGGAGAAACGAGGTTAGGGCTACCACCTTAACCGCCCAGGTGCTGGCTCTGCGTGAATATCTTAGGAAATGCAAGCTGAGGACAG
Seq A exon
GTACCCATCCCATCCTTTGCTGAGATTTTTGCTAGCACTTCCACGGATTTCTGTCAGTGGTATAGAAAAACTTACAGCTGGCCCAATGGGCTCTGCACAAAGAGGCTTCCCATTAAGAGACTCTGCTACCTGGGGGAGATGGAGAAAGGGTTTGAGACAAGTGTCCAGATATGTAGCTAGAGGTAAAGCCTTCAGGGAGGATTTGCACAGGAGCTAGAGAACCAGAAAGATGGGACGAAGAGGGAGAATTAGTGCCCTGTGTGTTAAAAGTGGATACAGAGCTGGAATTCAGAGAAGAGAGCTAAAATGGAAGTTTCCCTTTATTGCTTTAGCAAGAATTTTCCTTTCTCATGAAAAGTCTCTGAAAAGGAAACCTCCTAGGCTGGGAATCAGTCCAGGGTGCTCCCATGAGGCCCTGAGCCATCTTTGGACTTCTGAGATAAAAAGGGAATTTGTTTTTCCTGTGCATTGGGCTTAGGGTTCCCACCTACCTCTTTTGTCAAAGACAAATAGGCAAGAAAATAGACGACTTGACATCTGTGATTACCTACCCTGGCCTTCAAGGTTCTTGCAAGTGTTATTGAAAGGATGTAAGTAAGCCAGGATAGTTACCAAGTTTCTGACTGCTCTTGGAAGCCTTTCACTGACTCTGACTGTTTGGATATTGAATAAGAATACCCAAAATATGTTGCCAAACAGAAAGAGATTCTGAGTCTCAGATTATTTCTCTGCCATAAAGCCCTATCACAACAGAAGTGTGACCCATCCTGCTCTTAAGTTGTCTAAAGAAAAAGAAGAGCCCACTATCTGGTATTGTACACTGCAGGATTATTAAGAATTAAAAAAAAATAACCTAAATCTCTTCTCTTGCAATCAAGACCCATTTTTTTCTGTTTGACCTATATAGAGATAGAAGGGACCTCTGTTTTTATTCATTAGTAGCATCATTCATCAGCCTTCTTCTCCAGACAGAGAAAACTACATCCGACATTTTTAACTTTCCCAGTGGCTGTATTTCCAATCCCTTTCTTGACTTTGATGTTTTCTGATGAACACACACTGGCTTCACCATACGCTTCTTTCAAACTGAATATATTTTTCTAATGAGATCTGACTGGTGCCTGACAAATAAACAGGTTTGTTCTTCTGGGTCATGTTAGCAGCAGTTCTTCCCCCCTTTTCCAGCTCTGGTTCAAACTCTTTCTGTTCCTTTTTACTTTTCCTGATTAAACTTCAGCTCCTCACAGACCAACAATTTCTCTTACCTCTTAGGATTACTTTGGAGTCTTAACACCTGCTTTCCAAGTTATCAGTTTTTCTACCATATTTACTACCAGTTTTCATTGGATGGTAGACCAAGTGCCTTTTTATTGAGGCTTGTCCCAAGTGAGGTACCTTTTGGCCCAGCCTCATGATACAAATACGCCCCTTGGTTGGGACTTTTACCTATAGTAATCATTTCATTCTAAACTGATGAGACTGTGATTTGTGGCAGAAAATCTTCTGTGTGATTACATCCATCTTGTTGAGTGCAGGTCTATATGTATTTCTTCCTGTATGTTTCCAAATTGCTTACTTTCCTGTACTTCATGTGCTTGAAATTAAATGGATAGCCTTTGAATTTCCAGGACAGTTCTTTTTTTTTAAATGAACTTCTTCTAACCTTCAGGTATATTCTGTTTCTATAATGAGGTCCACAAAATACCAGTTAGTGGCTTTGCTACGTAGCACCTGCCAATTTCTTAGTTCCTCCAAGAAGCTTGGTGCAGGCTCCGTTGATCGGAACACATCAAGCTTTTAAAGTTCATCTTCCAGCAAGCTCCTCCTATCTAGTTTTGTCTATTATCCCTGGGCCTGTTCTTCATAACTCCCTTAGAAATATCACTCCTTTCCCATTTTCATGGGCATTGCTGATATGAATTTGTTCCAG
Seq C2 exon
GTCACAATTTGGGTCTGCAGCAGAAATGCTTTCAGAACAGACAGCAGCGCTGGGGACAGGATGGGAATCAATGAATGTACAGCTGGATGGAGCAGAGCCCCAGGTGGAAAGGGGAAGCCAGGAAGAGCGGCCATGGAGAACAGTACCAGGACCTCTGGAGCACCTGTGCTGTGACCTTGAAGAGGAGCCACAGTCCCTTCAGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167528-ZNF641:NM_152320:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.895
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGGGAAATGAAAGCCCT
R:
AAGGGACTGTGGCTCCTCTTC
Band lengths:
345-2275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)