HsaINT0188021 @ hg19
Intron Retention
Gene
ENSG00000197343 | ZNF655
Description
zinc finger protein 655 [Source:HGNC Symbol;Acc:30899]
Coordinates
chr7:99159511-99160117:+
Coord C1 exon
chr7:99159511-99159596
Coord A exon
chr7:99159597-99159990
Coord C2 exon
chr7:99159991-99160117
Length
394 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCCAGGATGTGTTATTTCAGGAG
3' ss Score
3.35
Exon sequences
Seq C1 exon
CTCCACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCCCAGGAGACCAGGCAGCTGCGCTCTTGACAGCCAGGTACCAG
Seq A exon
GTGAGCTGAGGAACCCTCTGCTTTTCCTCAGGGACTATTGCTACTGATGGAGTGTGGCCTCTCTCTCATCCCATCTGTAGACCTTGCCTGGAATTTTTTTCAATAGCAGACTCCAGTTTGGGAATTGATCCTCTTCGGAGACCTGGACTTCACATAAACCAACTTCCCATCTCCCCAGTGCCATGAGCAAACTCTGTTTTCTCTTTGTCCATGGTTGTGTGATGGGTGCTTATTAGATGTTTAAGGGTTATGGGCTTTATTCCGTAGGTTCTAATCTGTTCTCCCTCCTCCTCAACGTAAGTACACAGTGGATACCCTCTCTATGATCTTCATTCTCTGGCCATGGTGCTACAGTGTTCTCATTCCTCAGAGCAGCCAGGATGTGTTATTTCAG
Seq C2 exon
GAGTTTGTGACATTCGAGGATGTGGCTGTGCACCTTACTCGAGAGGAATGGGGATACCTGGACCCTGTTCAGAGGGACCTCTACAGAGAAGTGATGTTAGAGAATTATGGGAACGTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197343-ZNF655:NM_024061:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.060
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCAGGTGCCTGCTCTTC
R:
GTGAGACCACGTTCCCATAAT
Band lengths:
201-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)