HsaINT0188035 @ hg38
Intron Retention
Gene
ENSG00000182983 | ZNF662
Description
zinc finger protein 662 [Source:HGNC Symbol;Acc:HGNC:31930]
Coordinates
chr3:42913201-42917641:+
Coord C1 exon
chr3:42913201-42913302
Coord A exon
chr3:42913303-42914326
Coord C2 exon
chr3:42914327-42917641
Length
1024 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
GCTCCAATTTCTTTTTTCAGAGG
3' ss Score
8.31
Exon sequences
Seq C1 exon
GATATCCATTTCTAAAGCCTGCTGGGATTTCCCATCCTGAGCAGGTGGAAGAGCCATTAAACCTGAAACTGCAAGGAGAGGGTCCAAGCCTGATTTGTCCGG
Seq A exon
GTAAGTGAGAGGGAAATGAGCATTCTTCTCTCAGTCACATCTTTTCCTATCTTTCTTTTATAAGATGTAAAAGTCCATTTTGCCATTCATGTTCTAAACAAATATGGGGACCAGATCCTTAAATCAACCAATTAAGAGAAAACTTAAACCCTAAGCTTCCAACTTTCATTAGGACAAGCTCAATTAATTAAATTAATTAAATTAGGATGGGTCTTTTGCGTTAGACTTAAACTGAACAGATGGCCTGCCCCATCTAGCTGCTATGATCACCCAATATTTTTAATGTAGATGCTGTATTTTACTCATTGTGTTAGTTGTTAGAGATAAAAAAAATCAAGTCATATATGGCCCTTATCCTGGAAGGACTCACAGTCTCATGGGACATGATACATAAATGTATAATTACAGAAAAATGATGAAACTGTAACAGAATGTGAATAAGACACTATGAGAACAAAGAGGAGGGAGTCTTTTCCGAGTTCTGCCTGGAGTAGTTTGAGAAAGCACTTCCCATGGTTTCATGGTGAACTTGGTGCTTGGATTGAAAGAGAAGACTATACTTCCTTTTAGTGTTGAAAAGTATGAGGAAGCTCATTCTTGCTACTGTCTGCTGCATGTGACAAGCCCAGGTTCTCAGGTATACCACTAAGGATTCCTTATTTCTGAACAGGTCCTCTGCCCTAAGTCCTGGCCTGTTCTTCTCATGGTATAAACTGTACTCAGCTACCTAGGAGGAATTCTGACTTTGTTTTCCTTAGATTCAATTCACCTGTTTTCTGAGAGCCTACCCTGGTCCTTGGTTTGGTGCCAGGAATCATAGCCCGCAGGGATTCTATCTAGTTGCTGTCTTTACTTTTGGTTTCTTTCTGTGTATTAGCCTTGTTTTTGCCATTTTCAGCTGGGACAGGGCCACTGAGACATGGGTGGCACTTGGAGAGAAGTGGACGTATTAATACCACTTGGTGACCTTAGTCGCTGTGTCATGGATAATGATGACATTTGAAGCTCCAATTTCTTTTTTCAG
Seq C2 exon
AGGGTGTGTTGAAGAGGAAGAAAGAAGATTTTATTCTGAAGGAGGAAATTATTGAGGAAGCACAGGACCTCATGGTCCTATCAAGTGGACCCCAGTGGTGTGGATCCCAGGAATTATGGTTTGGGAAAACCTGTGAAGAGAAAAGCAGGTTAGGGAGATGGCCTGGTTACCTCAATGGGGGACGTATGGAAAGTTCTACAAATGATATTATAGAAGTGATTGTCAAGGATGAGATGATCTCAGTAGAAGAGAGTTCAGGGAATACTGATGTCAATAACCTCCTTGGTATACATCACAAAATTCTAAATGAGCAAATATTCTATATATGTGAGGAATGCGGCAAGTGTTTTGATCAAAATGAGGACTTTGATCAACACCAGAAAACTCATAATGGAGAGAAGGTCTATGGATGTAAGGAATGTGGGAAGGCTTTCAGTTTTCGATCACATTGCATTGCACATCAGAGAATTCACAGTGGGGTGAAACCCTATGAATGTCAAGAATGTGCTAAGGCCTTTGTTTGGAAGTCAAACCTGATTCGTCACCAGAGAATACATACTGGAGAGAAACCCTTTGAATGTAAGGAATGTGGGAAGGGCTTTAGTCAGAACACAAGCCTTACGCAACATCAACGGATCCACACTGGTGAGAAACCATACACATGTAAGGAATGTGGGAAAAGCTTTACTCGAAACCCAGCCCTTCTTCGACATCAGAGAATGCACACTGGGGAGAAGCCTTACGAATGTAAGGACTGTGGGAAGGGCTTCATGTGGAACTCAGATCTTTCTCAGCACCAGAGGGTCCACACTGGGGACAAGCCTCATGAATGTACTGACTGTGGGAAAAGCTTCTTTTGCAAGGCACATCTTATTCGACATCAAAGAATCCATACTGGGGAAAGACCCTATAAATGTAATGACTGTGGGAAGGCCTTCAGTCAGAATTCTGTCTTAATTAAGCACCAGAGGCGCCATGCTAGAGACAAACCCTATAACTGTCAGATCTCTCACCTTCTTGAACATTAGAGAGTGCATAATGGTGATACTTGTTTATAATTCTTATGCTGCAGGAACCCTAGAGACAAAATGAGATGACCATTCACAATTTGCTGTAACCCTTAACTTAAATAGCCAGTATTATCTTGCCCTTTTGAACATTTACCATGTACTCTAGCAAGACTGGTCCCTCTGTTCTATGATGTTTTAACAAGGCATCATTTAGTTGGGCAGCTACTCTGTATCAGGTGCTAACCACTTTACATACATTAATTTGCATAACAATCCTATTAAGGTAGGTGCTCTTCTCCCCATTTTACAAATGAGAAATCTGAGTTGAAAGAGGTTATAAAACTCATTCAGGGTTGCTCAGTTAGTAAGTTATAGAGTTGAAATTGGAGCCAGGCCTATCTGACTGCAGAGTTTACTGTTCTTTACTTAATTGTACATATTTATGTCTCTGCCCATTTTTATTTGCTTATTTTCCTGTGCTTTTAGTTTCCCTTCATCACTCAGATCTAGCTCCTTCAACTAAGAAGATCTCTCTTCCTCTTCTACTTGTAATCAGTACCACCCAAGTTAGTATTTAATTATGTGCCATCTTATATTTTTCTAATAGTCTCATGTCTTTTAATCTTAACCCCAGCTAAATGACTCTGAGGACCAACAGTACATTTCTTTTATGTTTTTCAAATCCTGAAACATTAATCTTTGACTAGATATAACATGCTCATGATAAAAAAGAATTGAAATAGTTGAAAAGGGTGTTCAGTGAAAAGTAAATTTCCTTGTCATTCCTATCTCTTGAGTTCTCCCCAGAGGCAATCACTGCTACTGGTTGTGTATCTCTGTAGATACTCTTTGTATACAAGTGTTTATTAGTATTGCTTTTCATAATTCTGTCTCACTGAAAACCTTATTTGATGGAAGCAACATTGCAGTTAAATTGTGAACTCTAAGACCTTTTCTTCAGAAGTTGCTTTCCTTTTGAGGCCACCAAAGTAATTTAGGGAAACAGCAGAGGGTAATCCAGGTCTTTTTTTTTTTTTTTTTTTTTTTAGACAGAGTCTCACTCTGTTGCTCTGGCTGGAGTGCAGTGGTGCTATCTCAGCTCACTGCAAGCTCCACCTCCTGGGTTCATGCCATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCCCGCCACCATGCCTGGCTAATATTTTTTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGCTGGTCTCGATCTCCTGACCTTGTGATCCACCTGTCTCGGCCTCCCAAAGTGCTGGGATTACAGGCCTCAGCTACCACGCCTGGCCAATCCAGGTCTTAAGAGACCTCATTGCCTTTGTTTTATGAGATATCATTCTGGGATTGGGAATATGTAAACTCAACTGGAGATTTTTTTTCATAAAAATTTATATAGTTCCAGCCCTCTCATTGCTTCCTATCCTAAATCCTCTTCCAGTCTGTCCATCCCTCACTACCATGATAGTCTACATTCTGATAAGCTGTGAGGCCACTGCCAAGGGAGGGAGAAATGGTCACTTTCTGGTGGTGGTTAATGCTTTGTTAGATAGCTTCATCCAGTCAATAGTTGAAAAGTTTTCACATAATCCAGTATTGGCATCAGAGCCAGAAATGCCCTCCCTAGGTCCAGGACCAAAGATAAAACAAACACGAGGAACATGTAGCGTCTACACAGGAAAGTAAAGAATTATAGAATTAACTAATTCTACTTGAAATCAGGAGTTTTATAAAACAACATTTTTAGACGTGGTCATCTTTTATTGGTTTCCATCATCTCTTCCCCTTCTCTCTGGGAACAGTTACCCGGGTATTCTTTGGGAAGCTATCCTTTCTCAGCTATGTGGTTTGGCACCACCACCATCTTCATGAGTGGACCCTGTTTGGCTTGTGTCAATCAGTTTATCCCATCCCCTTGGCCACAGAGCCATTGTGATATGAGGAGATACTGGCTCTTCTGGAAAAGAGAGGCTTTTCTTCATCGAGAGCTACCAGAGGAGATATTATCTGTCCTCTGTGTGGCACATAGGAAAATGTGAGACCTAGAATTATAGCAACTTTTTTTTTCTGTTAAAAGGGGAGATTCTCAAGCTTCCAGGTGCTACCATATGGAGCCTAAGGATAAAGCCAATACCAAAGAAAACAGTGACTAAACAGAGAGAAACTAGGTCCTTGGTGACATCTTTTGAGCCACTAGACCAAGCTTTACCTGAAGCAGAGCTACCTCAGAACTTTTCAGCTATGTGAGCCAATAAACATCTGTCAAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182983:ENST00000440367:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTCTAAAGCCTGCTGGGA
R:
TCCCTGAACTCTCTTCTACTGAGA
Band lengths:
358-1382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains