HsaINT0188035 @ hg19
Intron Retention
Gene
ENSG00000182983 | ZNF662
Description
zinc finger protein 662 [Source:HGNC Symbol;Acc:31930]
Coordinates
chr3:42954693-42960825:+
Coord C1 exon
chr3:42954693-42954794
Coord A exon
chr3:42954795-42955818
Coord C2 exon
chr3:42955819-42960825
Length
1024 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
GCTCCAATTTCTTTTTTCAGAGG
3' ss Score
8.31
Exon sequences
Seq C1 exon
GATATCCATTTCTAAAGCCTGCTGGGATTTCCCATCCTGAGCAGGTGGAAGAGCCATTAAACCTGAAACTGCAAGGAGAGGGTCCAAGCCTGATTTGTCCGG
Seq A exon
GTAAGTGAGAGGGAAATGAGCATTCTTCTCTCAGTCACATCTTTTCCTATCTTTCTTTTATAAGATGTAAAAGTCCATTTTGCCATTCATGTTCTAAACAAATATGGGGACCAGATCCTTAAATCAACCAATTAAGAGAAAACTTAAACCCTAAGCTTCCAACTTTCATTAGGACAAGCTCAATTAATTAAATTAATTAAATTAGGATGGGTCTTTTGCGTTAGACTTAAACTGAACAGATGGCCTGCCCCATCTAGCTGCTATGATCACCCAATATTTTTAATGTAGATGCTGTATTTTACTCATTGTGTTAGTTGTTAGAGATAAAAAAAATCAAGTCATATATGGCCCTTATCCTGGAAGGACTCACAGTCTCATGGGACATGATACATAAATGTATAATTACAGAAAAATGATGAAACTGTAACAGAATGTGAATAAGACACTATGAGAACAAAGAGGAGGGAGTCTTTTCCGAGTTCTGCCTGGAGTAGTTTGAGAAAGCACTTCCCATGGTTTCATGGTGAACTTGGTGCTTGGATTGAAAGAGAAGACTATACTTCCTTTTAGTGTTGAAAAGTATGAGGAAGCTCATTCTTGCTACTGTCTGCTGCATGTGACAAGCCCAGGTTCTCAGGTATACCACTAAGGATTCCTTATTTCTGAACAGGTCCTCTGCCCTAAGTCCTGGCCTGTTCTTCTCATGGTATAAACTGTACTCAGCTACCTAGGAGGAATTCTGACTTTGTTTTCCTTAGATTCAATTCACCTGTTTTCTGAGAGCCTACCCTGGTCCTTGGTTTGGTGCCAGGAATCATAGCCCGCAGGGATTCTATCTAGTTGCTGTCTTTACTTTTGGTTTCTTTCTGTGTATTAGCCTTGTTTTTGCCATTTTCAGCTGGGACAGGGCCACTGAGACATGGGTGGCACTTGGAGAGAAGTGGACGTATTAATACCACTTGGTGACCTTAGTCGCTGTGTCATGGATAATGATGACATTTGAAGCTCCAATTTCTTTTTTCAG
Seq C2 exon
AGGGTGTGTTGAAGAGGAAGAAAGAAGATTTTATTCTGAAGGAGGAAATTATTGAGGAAGCACAGGACCTCATGGTCCTATCAAGTGGACCCCAGTGGTGTGGATCCCAGGAATTATGGTTTGGGAAAACCTGTGAAGAGAAAAGCAGGTTAGGGAGATGGCCTGGTTACCTCAATGGGGGACGTATGGAAAGTTCTACAAATGATATTATAGAAGTGATTGTCAAGGATGAGATGATCTCAGTAGAAGAGAGTTCAGGGAATACTGATGTCAATAACCTCCTTGGTATACATCACAAAATTCTAAATGAGCAAATATTCTATATATGTGAGGAATGCGGCAAGTGTTTTGATCAAAATGAGGACTTTGATCAACACCAGAAAACTCATAATGGAGAGAAGGTCTATGGATGTAAGGAATGTGGGAAGGCTTTCAGTTTTCGATCACATTGCATTGCACATCAGAGAATTCACAGTGGGGTGAAACCCTATGAATGTCAAGAATGTGCTAAGGCCTTTGTTTGGAAGTCAAACCTGATTCGTCACCAGAGAATACATACTGGAGAGAAACCCTTTGAATGTAAGGAATGTGGGAAGGGCTTTAGTCAGAACACAAGCCTTACGCAACATCAACGGATCCACACTGGTGAGAAACCATACACATGTAAGGAATGTGGGAAAAGCTTTACTCGAAACCCAGCCCTTCTTCGACATCAGAGAATGCACACTGGGGAGAAGCCTTACGAATGTAAGGACTGTGGGAAGGGCTTCATGTGGAACTCAGATCTTTCTCAGCACCAGAGGGTCCACACTGGGGACAAGCCTCATGAATGTACTGACTGTGGGAAAAGCTTCTTTTGCAAGGCACATCTTATTCGACATCAAAGAATCCATACTGGGGAAAGACCCTATAAATGTAATGACTGTGGGAAGGCCTTCAGTCAGAATTCTGTCTTAATTAAGCACCAGAGGCGCCATGCTAGAGACAAACCCTATAACTGTCAGATCTCTCACCTTCTTGAACATTAGAGAGTGCATAATGGTGATACTTGTTTATAATTCTTATGCTGCAGGAACCCTAGAGACAAAATGAGATGACCATTCACAATTTGCTGTAACCCTTAACTTAAATAGCCAGTATTATCTTGCCCTTTTGAACATTTACCATGTACTCTAGCAAGACTGGTCCCTCTGTTCTATGATGTTTTAACAAGGCATCATTTAGTTGGGCAGCTACTCTGTATCAGGTGCTAACCACTTTACATACATTAATTTGCATAACAATCCTATTAAGGTAGGTGCTCTTCTCCCCATTTTACAAATGAGAAATCTGAGTTGAAAGAGGTTATAAAACTCATTCAGGGTTGCTCAGTTAGTAAGTTATAGAGTTGAAATTGGAGCCAGGCCTATCTGACTGCAGAGTTTACTGTTCTTTACTTAATTGTACATATTTATGTCTCTGCCCATTTTTATTTGCTTATTTTCCTGTGCTTTTAGTTTCCCTTCATCACTCAGATCTAGCTCCTTCAACTAAGAAGATCTCTCTTCCTCTTCTACTTGTAATCAGTACCACCCAAGTTAGTATTTAATTATGTGCCATCTTATATTTTTCTAATAGTCTCATGTCTTTTAATCTTAACCCCAGCTAAATGACTCTGAGGACCAACAGTACATTTCTTTTATGTTTTTCAAATCCTGAAACATTAATCTTTGACTAGATATAACATGCTCATGATAAAAAAGAATTGAAATAGTTGAAAAGGGTGTTCAGTGAAAAGTAAATTTCCTTGTCATTCCTATCTCTTGAGTTCTCCCCAGAGGCAATCACTGCTACTGGTTGTGTATCTCTGTAGATACTCTTTGTATACAAGTGTTTATTAGTATTGCTTTTCATAATTCTGTCTCACTGAAAACCTTATTTGATGGAAGCAACATTGCAGTTAAATTGTGAACTCTAAGACCTTTTCTTCAGAAGTTGCTTTCCTTTTGAGGCCACCAAAGTAATTTAGGGAAACAGCAGAGGGTAATCCAGGTCTTTTTTTTTTTTTTTTTTTTTTTAGACAGAGTCTCACTCTGTTGCTCTGGCTGGAGTGCAGTGGTGCTATCTCAGCTCACTGCAAGCTCCACCTCCTGGGTTCATGCCATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCCCGCCACCATGCCTGGCTAATATTTTTTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGCTGGTCTCGATCTCCTGACCTTGTGATCCACCTGTCTCGGCCTCCCAAAGTGCTGGGATTACAGGCCTCAGCTACCACGCCTGGCCAATCCAGGTCTTAAGAGACCTCATTGCCTTTGTTTTATGAGATATCATTCTGGGATTGGGAATATGTAAACTCAACTGGAGATTTTTTTTCATAAAAATTTATATAGTTCCAGCCCTCTCATTGCTTCCTATCCTAAATCCTCTTCCAGTCTGTCCATCCCTCACTACCATGATAGTCTACATTCTGATAAGCTGTGAGGCCACTGCCAAGGGAGGGAGAAATGGTCACTTTCTGGTGGTGGTTAATGCTTTGTTAGATAGCTTCATCCAGTCAATAGTTGAAAAGTTTTCACATAATCCAGTATTGGCATCAGAGCCAGAAATGCCCTCCCTAGGTCCAGGACCAAAGATAAAACAAACACGAGGAACATGTAGCGTCTACACAGGAAAGTAAAGAATTATAGAATTAACTAATTCTACTTGAAATCAGGAGTTTTATAAAACAACATTTTTAGACGTGGTCATCTTTTATTGGTTTCCATCATCTCTTCCCCTTCTCTCTGGGAACAGTTACCCGGGTATTCTTTGGGAAGCTATCCTTTCTCAGCTATGTGGTTTGGCACCACCACCATCTTCATGAGTGGACCCTGTTTGGCTTGTGTCAATCAGTTTATCCCATCCCCTTGGCCACAGAGCCATTGTGATATGAGGAGATACTGGCTCTTCTGGAAAAGAGAGGCTTTTCTTCATCGAGAGCTACCAGAGGAGATATTATCTGTCCTCTGTGTGGCACATAGGAAAATGTGAGACCTAGAATTATAGCAACTTTTTTTTTCTGTTAAAAGGGGAGATTCTCAAGCTTCCAGGTGCTACCATATGGAGCCTAAGGATAAAGCCAATACCAAAGAAAACAGTGACTAAACAGAGAGAAACTAGGTCCTTGGTGACATCTTTTGAGCCACTAGACCAAGCTTTACCTGAAGCAGAGCTACCTCAGAACTTTTCAGCTATGTGAGCCAATAAACATCTGTCAAACGAGTTAGAGTTGAGTTTTCTGTTATTTGCAACTTAGCCACACTAATACTGTTTTGTGTTTGAAATCACTGTTTTCTCATACAGCTCCTCAGTGTCACCTTTTCCTCTTGCTCAGTAGTCTCATAAGCTTCTCAGTTTTATCTCATCTCAGTTGCTTGGAAGTTGAGCATCTAAATAGGTGGCTTTTGCTGGGTGCAGTGGCTTACGCCTGTAATCCCATCACTTTGGGAGGCCAAGGTGGGCAGATCACCTGAGATTGGGAGTTCAAGACCAGCCTGACCAACATAGAGAGACCCCGTCTCTACTAAAAATACAAAATTAGCCAGGTGTGGTGGCACATGCCAGTAATCTCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAATCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAAATGAAAATAATAAATAGGTGGCTCTCATGACCTAAGGTTAATTTCATGCATACTACTAAGTGATGCTTTAAGTCATACCATTAGTGCAGGAATTTTTGCTCCTTAGTTCAGCTAAAATCTGGGTTCTTGTCTCATGACCAGGAAAAATTAGTCACAGGGACACATTGAAAAGTGAGGAGGGCAGAATTTATTAAGTGAAAAGGAAAACTCTCAACAAAAAGAGGGGTCCTGCATGCAGGTTTTCCATCTCACTAAACTGAATACCAGGCCACCACACATGAGCTGAAGAGCCTAGTCTTCTCCCCCTGCATGAATTCCTGGTGGCTACACCCCGTTCTCCCAGTGTGCAGGCAGGCCCTTAGTCTGAGCCACTCCACATTATTTCCCTTACTGTGTATGTGTTAAGGAACGGAATTTTTCATCATGGGCATGTTTAGGCAATCCCCCTGTGCACAATGACCTGGGCAGCATTTGGCTGTCTCCTGATTCTATCATTCCCCCCTCTAAAGAAGTACATCTAACTTAGAATAAGGATAAGGATAAGGGTAGTGATCGATCTTAACTGGTTCCTGCTGATGGGGGCACTGTTTTGGGAAAATAGCAGTGAGATCTCCCTCAGAGGCCTATCTAAGGGTCCCTGGTAAAAGGTGGCCATCATTTGAGGTTCCAATTGCATGAACATTCAGAGTTCAATGGCCTGAAGGTGAGAAGAGACAAACCAGGTTATTAGAAGACAATCAAAATGAAACAAAGCGGGGATGGTAAGGACAGCTAAAAAAAATCCTAAGGCTGCTGACACACCCAGATAACTGGTAGCTATAGTTATGCCTGCTAAGATTGGGGTGTTTGGGGCTTGGCTTTCGTTAGCTCCCTTGGTCTTATTTTCCCAAAAAAGAAACCTCCAGGTTATGGGCACCTTATTTAGTCTAATCATCTGGCAGGATTTGCAGGGTAATTGCCCAGAACTAGAATATTGATCCAGATTTTTACATTACTCATCCCTTTTGCTGCTTCTGAGCTGCAGCCAGAGATTGCTGGTTGGTTCACAGGAATAAGCAGTGTTAGTTTAAAATGTGGGCAAAAACTTAAAAACAACGAATGAGTCTAAAATCTAATGACAAATATATAAGTCTTGAAACATAATTTCTCTCCAGTTCTCATTTTTGTTAAAAATAAATCATGATAGGACTGAGTTGTTTGCAAAATAAACTTTAGTCTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182983-ZNF662:NM_207404:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.6),PF097235=Zn-ribbon_8=WD(100=12.8),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTCTAAAGCCTGCTGGGA
R:
TCCCTGAACTCTCTTCTACTGAGA
Band lengths:
358-1382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)