HsaEX0074142 @ hg19
Exon Skipping
Gene
ENSG00000182983 | ZNF662
Description
zinc finger protein 662 [Source:HGNC Symbol;Acc:31930]
Coordinates
chr3:42950285-42959133:+
Coord C1 exon
chr3:42950285-42950401
Coord A exon
chr3:42954693-42954794
Coord C2 exon
chr3:42955819-42959133
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTGTATCTTGACCCTGGCAGGAT
3' ss Score
6.57
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
CAGCATTTCCATTTCCCAAACCGGCTCTGATTTCCCAGCTGGAGCGAGGGGAAACACCCTGGTGCTCGGTTCCTCGGGGAGCTCTGGATGGAGAGGCCCCAAGGGGCATCTCCTCAG
Seq A exon
GATATCCATTTCTAAAGCCTGCTGGGATTTCCCATCCTGAGCAGGTGGAAGAGCCATTAAACCTGAAACTGCAAGGAGAGGGTCCAAGCCTGATTTGTCCGG
Seq C2 exon
AGGGTGTGTTGAAGAGGAAGAAAGAAGATTTTATTCTGAAGGAGGAAATTATTGAGGAAGCACAGGACCTCATGGTCCTATCAAGTGGACCCCAGTGGTGTGGATCCCAGGAATTATGGTTTGGGAAAACCTGTGAAGAGAAAAGCAGGTTAGGGAGATGGCCTGGTTACCTCAATGGGGGACGTATGGAAAGTTCTACAAATGATATTATAGAAGTGATTGTCAAGGATGAGATGATCTCAGTAGAAGAGAGTTCAGGGAATACTGATGTCAATAACCTCCTTGGTATACATCACAAAATTCTAAATGAGCAAATATTCTATATATGTGAGGAATGCGGCAAGTGTTTTGATCAAAATGAGGACTTTGATCAACACCAGAAAACTCATAATGGAGAGAAGGTCTATGGATGTAAGGAATGTGGGAAGGCTTTCAGTTTTCGATCACATTGCATTGCACATCAGAGAATTCACAGTGGGGTGAAACCCTATGAATGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182983-'3-7,'3-6,5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.110 A=0.229 C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.6),PF097235=Zn-ribbon_8=WD(100=12.8),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.6)
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGATTTCCCAGCTGGAGC
R:
GGCCATCTCCCTAACCTGCTT
Band lengths:
256-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)