HsaINT0188034 @ hg19
Intron Retention
Gene
ENSG00000182983 | ZNF662
Description
zinc finger protein 662 [Source:HGNC Symbol;Acc:31930]
Coordinates
chr3:42950285-42954794:+
Coord C1 exon
chr3:42950285-42950401
Coord A exon
chr3:42950402-42954692
Coord C2 exon
chr3:42954693-42954794
Length
4291 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGTATCTTGACCCTGGCAGGAT
3' ss Score
6.57
Exon sequences
Seq C1 exon
CAGCATTTCCATTTCCCAAACCGGCTCTGATTTCCCAGCTGGAGCGAGGGGAAACACCCTGGTGCTCGGTTCCTCGGGGAGCTCTGGATGGAGAGGCCCCAAGGGGCATCTCCTCAG
Seq A exon
GTGAGTGAGGGCACACGTGCCGGTCATCTGACCAGTTTTCTTGTCATGATCTTTAAAATGTCATAGATAGGTGTTTTTTTAATCTAGTGTTGTAGACACTAGTGGGATTGCATTTCTTCTCTGTGTTCCCATAGTTTTATGTCTTCTTTTTTTAAAAAAATTTTTTTTAGTATTTATTGATTATTCTTGGGTGTTTCTCAGAGAGGGGGATTTGGCAGGGTCATAGGACAATAGTGGAGGGAAGGTCAGCAGATAAACATGTGAACAAAGGTCTCTGGTTTTCCTAGGCAGAGGGCCCTGCCGCCTTCCGTAGTGTTTGTGTCCCTGGGTACTTGAGATTAGGGAGTGGTGATGACTCTTAACGAGCATGCTTCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAATCCATTTAACCGTTAGTGGACACAGCACATGTTTCAGAGAGCACGGGGTTGGGGGTAAGGTTATAGATTAACAGCATCCCAAGGCAGAAGAATTTTTCTTAGTACAGAACAAAATGGAGTCTCCTATGTCTACTTCTTTCTACACAGACACAGTAACAATCTGATCTCTCTTTCTTTTCCCCACATTTCCCCCTTTTCTATTCGACAAAACCGCCATCGTCATCATGGCCCGTTCTCAATGAGCTGTTGGGTACACCTCCCAGACGGGGTGGCGGCCTAGCAGAGGGGCTCCTCACTTCCCAGATGGGGCGGCCGGGCAGAGGTGCCCCCCCACCTCCCAGACGGGGCAGCGGCTGGGCGGGGGCTGCCCCCCACCTCCCGGAGGGGGCGGCTGGCCGGGCGGAGGAGCTCCTCACATCTCAGACGGGGCGGCCAGTCAGAGACGCTCCTCACCTCCCAGATGGCGTGGCGGCGGGGCAGAGACACTCCTCAGTTCCCAGACGGGGTCGCGGCCAGGCAGAGGCGCTCTTCACATCTCAGATGGGCCGGCGGGGCAGAGGCGCTCCCCACATCCCAGAGGATGGGCGGCCGGGCAGAGACGCTCCTCACTTCCTAGACGGGGTGGCGGCCGGGCAGACGCTGCAATCTCGGCACTTTGGGAGGCCAAGGAAGGTGGCTGGGAGGTGGAGGTTGTAGCGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCAACATTGAGCACTGAGTGATCGAGACTCTGTCTGCAATCCTGGCACCTCGGGAGGCCAAGGCTGGCAGATCACTCGCAGTCAGGAGCTGGAGACCAGCCCGGCCAACACGGCCAAACCCCGTCTCCACCAAAAAATACGAAAACCAGTCAGGCGTGGCGGCGCCCGCCTGCAATCCCAGGCACTCGGCAGGCTGAGGCAGGAAAATCAGGCAGGGAGGTTGCAGTGAGTCAAGATGGCGGCAGTACAGTCCAGCCTTGGCTGGGCTTTAGAGGGAGACCGTGCAAAGAGGGAGAGGGGGAGGGGGAAGGGGAGAGGGAGAGCTTTTATATCTTCTTGAGTTCTTGTTTTATTCATCCTGGCTCCTCTGTGTGCCATCTTCATTAACCTGTTTTGCCTCTTCCCCATCGCTGATATTATGGCTACCATGTATCTTTGCCCCATGAGTTTCCTGTTTACTCTGATCTTGGGTGCCCTTTCTACTTCCTGGCCTGTTTACAGTCTTCCAGCTTGGGATATAATGGCCATCTTTATCATTAGAAACCAAGAACTCTCAACCCTCAGCCAGATAGTTCCTATTCCTCAGGGGAAAACCCTGGGATTACTTTAGGCCCAACAGGACTTTCTTACTCTTAGTTTCCTAGTGATAACTGTGTTTCCTGGTTGCCTCCTTGGCCCCATTTCATCTTCCCATAGGGCTCTTATGTGGGCGCAGTGTGACTTGAGCTGTGCTCCAAATTTCCTCATTCTCACAGTTCCTTGTTCTGTCTTTTCATATTAGAATACTCTTGATTGCAGGTATTAAAACCCAATTCAAACTGGCTTAAACAAAAATAATTTGTTGTTTCATGTAACTGGGAAGTCTGAGGTAGAGTGGGCTGCAGGTATAGTTTGATCAGAACTACATTCTCTGCTCTGTCTCCGTATGTGTTGGCTTTGTCTACAGTCTGGCTCCCCTTTTGGTTGTAAGGTGATTGGTGGTAGTAACAGGACTCTGCTGCTTCATACCTAGGTGAAGAAACCTGGCAGGCCTTCCTTAGGCTTTAAACATTGTGAATCAAAGTGCCAAGTATACTCTAATGGACTACCTTAAGTCATATGCCAGCTCTAAATCAATCCTGTGGCAAGGTAACTACTGTGCACTGATTGACTTGGTCTGAATTGCCAATCTCTGAATCAGTCTCTCATGTAGTGAGTGGGATGGGATTAACCTGCTTAGCTTAGCCAAGTCAGAGCCTACCCTAGGAAGTGGAGTTGGGATACCCAACTCCCCACTCCAGCCCCCTACAAAGGGCATAGCTACTTTACAGTGGGGAGTAGTGGAAGGGGTATGGGGAGACCACCACAGCGTCTTCTGCATTCTTAGTGCTTCCTCTCCTCACCACCTAAGGGAATTTCTCATCTTTGCTTTTCTTTGCTTTAGGTAGAAAACCAACAGCTAAGTTACTCCTTGAGCAAAATTCTAACTCTCTGACGTGCAGCTGACTTCCTTGGCACATACATGTCCCTACTCAAAGTCCACTTTTGTCTTACAGAAGTTAGTACTCAGAGGATACATAGTCCCTGGATTTGGCAACAGAAAAGGTTGTCATTTGAAGGTGTAGAATTGATCTGTTTCTTAGGAGGTTTTGGATGAAGGTTACAAAGAGACAGTTCTAGCGAAAGCAGAAGTAAGGTGTATTACAGTAGATCTCTGTGAACAGAGGTGTCTGTTATTGAGTAAGAAGTGACTTTTGGAAATGGCTGAGTGAGGGTGTGAGTCCATTTCTTATGGATGCCATAGAGAGACCCCATCCATTGAATCTTTGTGGAATGGAAAGCAATAAATGGATAGGAAGGAAACTAGGAGATTACGGTTTCCCAGAATAGCCTGGCTAGACAGGAAGTCCTCATGAATAACTATTTGCAATTCCATCCTATCCTGATTCTATTCTATGTGAATTTGATTTCACCTCCTAGGGATAGGTGAAGAAGAGGCCTTCATCTTTTCTATTTCTTCTTGACGTTTTAAAGTGAGTGATATGTTTCATATCTTTGGGAACTGATGGAATTACAACTTCTCTGTTCCAGTATTTTCTATCCTTTATATAAATATATAAAAATATAAAAATATATAAATATATAAATTAAAAATATATGTATATATAAAATATATAATCATATAAATAAAATATATATAAATATATAAATAAAAATATAATATATATCTTATATATTATATATAAATATAATTATATATAAAATATATGATATATATAGTCCATCTCTCTATTATATATGATATATATCATATATAATTATATATTATATATGATATATTAAATATATATAATATATATTTATATATTATATATTATATATATTAATATATATATAATATTTTTGTATATTATATATTATATGTTATAATATATATTTTTATATATTTAATATATATTTATATATTATATATTTGTATATTTAATATATAAATACATATATTTATATATTTAATATAAATATATATATAAATACATATTTTATATATAAATATATTTATATAAAATACAAATATTTTTCTATAAAATATATATTTATATATTTTATATATATATAAATATATATATATATTTTTTATATATATAAATATATATATATTTTATATATATAAATATATATATATATTTTTTATATATATAAATATATATATATATATTTTTTGAGACACAGTCTCACTCTGTCGCCCAGGCTGGAGAGCAGTGACACAGTCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGGAGCTGTGACCACAGGTGTGTGCCACCATGCTTGGCTAATTTTTTTTGTATTTTTAATGGAGATGGGGTTTCACCATGTTGGCCAGGCTAGTCTTGAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGAATACAGGTGTGAGCCACCACGCCCAGCCTATCCTTATTATTCTGTACCATCAAATTTCTGCTTATCTATGTTACCAATCTTTTCACCCACCTTTATTCTCTCCCTACCACTTCCATGTCTGCTCTTTTCCTGATGGGCCTCACTCTTCTGACTGAGTCAGCCTTATTTGTATCTTGACCCTGGCAG
Seq C2 exon
GATATCCATTTCTAAAGCCTGCTGGGATTTCCCATCCTGAGCAGGTGGAAGAGCCATTAAACCTGAAACTGCAAGGAGAGGGTCCAAGCCTGATTTGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182983-ZNF662:NM_207404:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=NA C2=0.229
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)