GgaINT1000107 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P5D9]
Coordinates
chr18:15432-16889:-
Coord C1 exon
chr18:16868-16889
Coord A exon
chr18:16760-16867
Coord C2 exon
chr18:15432-16759
Length
108 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTCTTCTGTCACCATGCAGGAG
3' ss Score
10
Exon sequences
Seq C1 exon
ATGACTGGAGAGCTCAGCACAG
Seq A exon
GTGAGGTGGGAGGAAAAAGAGGAGGGTGGGGCTGGCCAAAGCCATCTCTGGCTTGGCGGTATTTTGGGTACTGCGTGCTATTCCTGGATTTCTTCTGTCACCATGCAG
Seq C2 exon
GAGATAGGATCACAACTATAAAGGAGGATGTGCAGAAAAGTGGTGTGTCCAGAAGGCACAGTGGCTGTGTCTCAGTGGGAGAAAGCAGAATGGATGTGCAAGGGGGCCTGGAGCAAGGAGAGCCACTGGGAAACCATCTGGGAAAGACAGCAAAGAACCCCTTGGACTTAAGCACCGCTCAAAAGCAGCATGAAGAGGTGAGGAGCAAGGAAGTGTGCCAGAAGAGAAGGCAGAACCCATGTGATGAGTGTGGGAAAAGCTGTGAAAGGTGTTCTGTTGGCTTTAAACACCAGTGCATTCATTCAAAGGAGACACTGTACAAGTGCCCTGATTGTGCAAAGTGCTTCAAATGGAGATCCACCCTCACCTACCACCAACGCGTGCACACAGGAGAGAGACCATTTAAGTGTCCTCAGTGTGGGAAGAGCTTCAAAAACAATTTTGGCCTCATCCGCCACCAGCGCATCCACACAGGAGAGAGACCATACAGCTGTCCTCAGTGCCCACAGAGCTTTAGAAGCAGTTCCCACCTCAACCGCCACCAGCGCATCCACACAGGAGAGAGACCCTACAAGTGCCTGGAGTGTGAGAAGAGCTTCAGAAGCAATTCTGACCTCACCTACCACCAGCGCATCCACACAGGAGAGAGACCCTACAAGTGCCATGAGTGTGGGAAGAGCTTCAAAAGCAATTCTGAACTTGTCCACCACCAGCGCATCCACACAGGAGAGAGACCCTACAAGTGCACTGAGTGTGGGAAGGGTTTCAAAAGCAATTCTGACCTTATCCGCCACCAGCTTGTCCACACAGGAGAGAGACCCTACAAGTGCCCTGAGTGTGAGAAGAGCTTCAGGAGCATTTCTGCCCTCATCTGCCACCAGCACGTCCACCCAGGAGAGAGACCCTACAAATGCCATGAGTGTGGGAAGAGCTTCAAAAGCGATTCTGAACTCGTCCACCACCAGCACATCCACACAGGAGAGAGACCCTACAAATGCCCTGAGTGTGGGAAGACCTTCAAAAGAAATTCCCATCTCACCTACCACCAGCGCACCCACACAGGAGAGAGACCCTACAAGTGCAACGAGTGTGGAAAGGGCTTCACAAGCAGTTCTGATCTCATTGTCCACCACCGCATCCACACAGGAGAGAGACCATTTAAGTGCCCTGAGTGTGAGAAGAGCTTCAAAAGAAGTTCTGACCTCATTTACCACCAGCACATCCACACAGGAGAGACACCCTATAAGTGCCCTGAGTGTGGGAAGGGCTTTAGAAGAAGTTCTAACCTCAGCTCCCACAAGCGCATTCACAGGGAAGACCAACTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000346:ENSGALT00000040211:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.183
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF097235=Zn-ribbon_8=WD(100=9.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTGGAGAGCTCAGCACA
R:
CTTCTGGCACACTTCCTTGCT
Band lengths:
246-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]