HsaINT0186960 @ hg19
Intron Retention
Gene
ENSG00000196378 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:13098]
Coordinates
chr8:145998501-146002962:-
Coord C1 exon
chr8:146002843-146002962
Coord A exon
chr8:145999991-146002842
Coord C2 exon
chr8:145998501-145999990
Length
2852 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
TGTTCTGTTTTTTGTTTCAGCTC
3' ss Score
11.74
Exon sequences
Seq C1 exon
GAGTAGGACCTGCAGGCCCCAAGCCTGGAGTGATCTCGCAGTTGGAGCGAGGGGATGAGCCCTGGGTCCTGGATGTTCAGGGCACCTCTGGGAAAGAGCACCTGAGAGTCAACAGCCCAG
Seq A exon
GTGCGTGAGGGGATCTGCTCCCCAACTCAAGTCACCGAACGAGCCTTTATTGGGGTCCAGGGTGTCTGATTAATGAATCAGGAGTTTGTGGGCCAGATTCATCGGGGCTAGCACAGGAGGCCTGACAGTGGCCTTTGCTGAAGCCCAGGTGACCCCTCTCAGTCTGGGCACCTTGGTGGGGAGATTATTGAGCAGAATCTCTCCAGGGCAGCATTTCTGTGGAAAATAGGAATGGACATTCCAGGCAAGGTCCCGTGTAGAGGGGAGTGAGTAGGTGCAGAACAGGGGTGCTGTTAGGGTCTGCGGAACCCCACAGAACCCTGCGCTCCAGAGCTGATGCCAGATAATGAGGGCCTAATGATGGAGCTATCATTTAATTCCCCTCTCTTCTAAATTAATACACTGCGGAAAAGTGAGAGACTACACATCACCCTGAATCTCACTACCCAGACATAGTTGTGTTGTAGTATATTTCTGCTATTCCTTTTCTAGCACTGGCCTTTCCACTGTTATGTACTGACACTGCTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCGCCCTCTATCACCCAGGCTGGAGTGCAGTGGTATGATCATGGCTCACTGCAGCCTTGACCTTCTGCACTTAAGCGATCCTCCCATCTCAGCCTCCCGAGTAGCTGGGACCACAGGCATGTCATGTGTCACTCACACTAATTTTTTGATTTTTTTACAGAGACGAGGTTTCACTGTGTTGCCCAGGCTTGTCTCGAACTCCTAGGCTCAAGCGATCCTCTCGCCTTGGCCTTCCAAAGTTCTGGAGTTAAAGTGTGAGCCACTGCCACTGCACCTGGCTCAGATGCTGTTGCTTTTTTATTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTTAGTTCACTGCAACCTCCACCTCCTGGTTTCAAGCGATTCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCCGCCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACTGTGTTGACCAGGCTGGTCTCAAACCCCTGGGCTCAAGCGATCCTCCCACCTTGGCCTCCCAAAGTACTGGGATTATAGGTGTGAGCCATTCTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTGGAGGGCAGTGGTGTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTTTTGCCTCAGCCTCCCCAGTAGCTGGGACTACAGGTGCACGCCACCATGCCTGGCTAATTTTTGTATTTTTAATAGAGACGGGGTTACACCGTATTGGCCAGGCTGGTCTCAAGCTCCTGACCTTGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGCCACTGTGCCTGGCTGACACTGCTTCTTAACAGAAATGATAGTGTGTTCTGCTGTGCAGACACGGAATGTGTTTCCATTTCTGTGCGCATGAGTCTCAGTCATGTCTTCAGTGCAAGTGCAGGCCAAAAGATTGGATAGCTCTGATGGTCACCTTTTTGCATGTGTCTGATGGTGTCTGAGGAAGGAACTGCTGGCTCAAAGGACTTCTTATTTTGTAAATTTGCTTATTTGAATGTAAATATCTATAGAAATAGGACAAACCCTAAGTTTATAACTCAGTGAATTTTTATGAAAAATCATCCTTCAGATTAAAATACAGACTGTTTCCGCTCCCCAGGAGCTCCCTGGCTCTCCTCTGCCATTTCCCACTGCTCCCCACAGGGGTCTTCTTTCTGACTCCTGTCACAAGAGGCTGCTTCCTCCTTTGGATTTTTCTGTGTAGACTCACACAGGGCATCTTTTGCTGAACACTGTGAGAGCTGCTTGTGTTTCATGGAGTAGCAGTGTGGTCTGTTTGGTTGCCATTGTTCTATTGTATGAACACACCACAACTTATGTTCCCTTCTACTTGTGGAGGACATTCAGTTGTCCAGGTTTGGGGTTGTACAGGAACTGCTGTGGACACTCTTGTGCATGTCTCTCTCTGGCGCCCGGAATACATTTCTGGCGCGTGTGTACCTGGGAGCAGAGTCACTGAGTCAGCATTTTCATAGATCAGCTTTAGATAAGGTTGCCAAGCCGTCCTCCAAAGCAGCAGCTCCAGCATAGGCTCCTGTAGTAGTGTGTGAGCACCGTCTGCTGCACATCTTGGCAGATATTGGTGTTCAGCACCTGTTCATGTGCAGTGCAGAGCCAGGCAAGGGGTGGAAGGATAGACCCCTTAGGACTAGGAAGAGAGCAGTAATGAAAGTGGCAGTCATGAGGTGCTTGCACCTGGAACTCACTGTGCTGGGCACTGGGCTGAGTGCTTCATGGTCAGTCTGTTGTATTAATCTGTTTTGTTCTCATGAGAGTGCCATGTGGTCACAGATGGAGAAACCAAGGCTCAGAAAGGTAGGTGAGTTGTTGCCTCAGGTGACTCAGCTGGCAAGTAGGGGCCAGGACTAATCAATCCTGACTGTGGCTGCTGGTATCAGTCTCTGAGCGGCCATGTGGCAGGACCCCACTTGGGTACTTGTCACTCTCCATTCTTGGGGAGTGGCCACCCAGGAGAGGTTTGTTGTGTGAGTGTCAAATCAAGGAAGGAAGGAGTGAATGTTTGAAGGGCTGTATGACTGTGGCCCCAGGTGAGCTGCATAAGCCTCTGAGCTCCAGGCTCTTATCTTTGCAAGGCTGTTGGGACTTTGGAGATGATCAAATTGGTTCCCCACAGGTGGCCAGCAGCATCTCATGCCTACCTTCCAGAGTCAGAGCAGGTGACCCTTAGATGTTCTGTTTTTTGTTTCAG
Seq C2 exon
CTCTTGGGACCAGAACTGAGTACAAGGAGTTGACTTCACAGGAGACATTTGGTGAGGAAGATCCCCAGGGATCTGAGCCAGTAGAAGCCTGTGACCACATCAGTAAGTCAGAGGGGAGCCTGGAAAAGCTAGTGGAGCAGAGAGGCCCCAGGGCAGTCACACTGACCAACGGGGAGAGCAGCAGGGAGTCTGGGGGAAACCTCAGGTTGCTGTCAAGACCTGTTCCTGATCAGAGACCTCACAAATGTGATATATGTGAGCAAAGTTTTGAACAGAGATCATATCTCAACAACCATAAGCGTGTACACAGGTCAAAAAAAACAAATACAGTTCGTAACTCTGGGGAAATCTTCAGTGCAAACTTAGTTGTTAAAGAAGATCAGAAAATTCCTACTGGGAAAAAATTGCATTATTGCAGTTACTGTGGGAAAACATTCAGGTACAGTGCCAACCTTGTCAAGCATCAGCGGCTTCACACTGAAGAGAAGCCCTACAAATGTGATGAGTGTGGGAAAGCCTTCAGCCAGAGCTGCGAGTTCATCAATCACCGAAGGATGCACTCAGGAGAGATTCCCTACCGGTGTGACGAGTGTGGGAAGACATTCACCCGGAGGCCCAACCTCATGAAGCACCAGAGGATTCACACTGGGGAGAAACCCTACAAGTGTGGGGAGTGTGGGAAGCACTTTAGCGCCTACTCTTCCCTGATTTATCACCAGAGAATCCACACCGGAGAGAAACCCTATAAATGTAATGACTGCGGGAAAGCCTTCAGTGATGGCTCAATCCTTATCCGACATCGTCGGACTCACACCGGAGAGAAGCCATTTGAGTGCAAGGAATGTGGCAAAGGCTTTACACAAAGTTCTAACCTTATCCAACATCAGAGAATTCACACTGGAGAGAAACCCTATAAATGTAATGAATGTGAGAAAGCTTTCATTCAAAAAACCAAACTCGTGGAACATCAGAGAAGCCACACTGGAGAGAAGCCCTATGAATGCAATGACTGTGGCAAAGTTTTCAGCCAAAGCACACACCTCATCCAGCACCAGAGAATCCACACAGGAGAGAAGCCCTACAAGTGCAGCGAGTGTGGGAAGGCCTTCCACAACAGTTCCAGACTCATCCACCACCAGAGGCTGCACCACGGAGAGAAACCCTACAGATGCAGCGATTGCAAGAAAGCCTTCAGCCAGAGCACGTACTTGATTCAGCACCGGAGGATCCACACCGGGGAGAAGCCCTACAAGTGCAGCGAGTGTGGGAAGGCCTTCCGGCACAGTTCCAACATGTGTCAGCATCAGCGGATTCACCTCCGGGAGGACTTCTCCATGTAACAGTGGCGCGGTGTCCGAGGGCAGAGTCCAGCTGAGCACTTCCTGCATGCGCCCCCGGCACCTGACTCTGCCCTTTATGTATTATCCACACGATGTTTTCACAGAGTGAAAGGACGTTTCTCATTAAACAAACCTCTTTTCTTAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196378-ZNF34:NM_030580:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.678 A=NA C2=0.251
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF0013017=C1_1=WD(100=11.9),PF127732=DZR=WD(100=12.5),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF0013017=C1_1=WD(100=11.9),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)