BtaINT0165334 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012353 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:HGNC:13098]
Coordinates
chr14:1491984-1496336:-
Coord C1 exon
chr14:1496226-1496336
Coord A exon
chr14:1494364-1496225
Coord C2 exon
chr14:1491984-1494363
Length
1862 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
TGTTCTGTTTGTTTTTTCAGCTC
3' ss Score
10.98
Exon sequences
Seq C1 exon
GAGCTGGACTTGCAGGTCCCAAGCCGGAGGTGATTGCACAGTTGGAGCAAGGGGATGAGCTGTGGGTCCTGGACATGCATGGGGCAGAGCAACCAAGCGTTGATGGCTCAG
Seq A exon
GTGCGTGGGGGGCTGCCTCCCCAACCCGCCTGCTGAACAGCATGTGTGGAGGCCCACAGAATGTGGTACCAAACTGACTCATGGGTTTGGAGGAAGATGGGCAGTACAGAGGCCCTGGGAGCGGCCTCTGCCAAAACCTGGGTGCTCTTTCTTTTAATTGAAATATAGTTGATTTACAGCATTCTGTTAGTTTCAGGTGTACAATTTAGTGATTCAGTATTTTTACAGATTATATGCCTTTTTTTTTTTTTTTTTAGATTATATGCCTTTTAAAATTATTACAAAATAATGGCTGTTTCCCCCATGTGGTACAGTATCTTTGTTGTTTAGTTATGGGGTAATTCTTGAGCTGAATCTTGTAGAAGGGTGAGAGGGGGCTGTGTTGATGGAGGAGAAGAGGGGAGGACACCTGGGCATGCCCTGAGGGACCCCGTGGAGCCCCGCCCTCCAGAGTCCTGCCTCCCAAGGATTATCAGGTGGTCACACGGGGCCACAGGGAAGAGCATCACTTCATCACCCTCCTCTAAGTTAACCTACTGGATGGTTATAGACTTTTACAGGAAAGGGAGGGGGTACACATCACCCTGGATTTCAGCACCCAGATGCAGATGTGTGCCGGTGTGCGCCTGCTGTCCCTTTTCCAGTGGAGTCTAGGCCACGCCCTCACACAGACGTCACTTCCTAGCAGGAATGCAGTGACCTGTGCGCATTCCTGGGTTGCTGATTTTTCACTGAACGCACTTCTGTTTCTGTGTCCCTGTGCTCACTGGAGGTACCCGAGAAGGCTGTTCTCTAGACTCACTGCGGCGGATGACCTGAGAGTGTTGTCCTGCAGTGTCTTCCTAGTGTCCCTGGAAGGAACTGTTGGCTCAAATGACTTGAATTTCTCTTCTGTAAATTTGTTTCTTCAGATATAAACACTTACAGAAATGAGACAAATCCTATTTACAGCTCAGTGAGTTTATACAAACAGTCCACCCACCAGATCAAAATAGGGAACATTCCTAGTTCCCTGGGAGACCACAGGGCCACCTCTGTCATCTCCCATAGCTCCCCTGGGCCTCCTCTCTGACTCCTGCAGGGCAGGGCTGCCGTGTTGTATGGAGTTTGTTTGGTCTCATCACCATTTGCTGTTCTGTCATGAACATACCGCAGAGTATTTTCCACTATACTTCTGCAGGGCATTTGGTTGTCCCCACCTTGGGCCTGTTGTGTGTGTGTGTGTGTCTTGGCTCACAGAGAACAAGTTTCTGATGAGCATGTTCCTGCACGTGGAGTCACTGTGTGTCTTGTCAGGGAAGGAAGGGTGGAGACAAGGCCTCAGATGAGGGCATCCTCTGTGGCGTCTGGAGTGTAAGTGCTGGTGGCTCACGGGTGGTCTCTCAGGACCCTGGGGAGACCCTTGAGAATGGACGTGGCCTGTGTGCTTGTCACCCTAATCTTCAGTTAGCACAAGCTGTGCTCTCTGTGCTCCTGGGGAGGCAGCCGGTTTCCCACCATGGATGTTGGGGTGGATCAGCTGCTTCTTCATCGGATATCCTTAGTGTCCTCTGGGGCCCCTCCTTGCTCTGGTTTTGGTGATGCTGTGAAGCTTCCATCTTCCGTCCTTTTGGGACGAGGACAGGTATCCTGCAGCAGGCTCTGTGTGCAGGAAAGGTTGAGTATTAAGAGTTGGGCGGATGCTTGCACTGCCCTGTGATTGCAGCCCTGGGCAAGGCTTTTAGCCTCTGACTGCCAGGCTCTCGTGTCTGCATGACATTGGAGATGGTGGAGCTGGTAGTCCACAGGTGGTTGGCAGCAGCTTTTACCTTCCTTCCAGAGTCAGAACAGGTGACCTTGAGGTGTTCTGTTTGTTTTTTCAG
Seq C2 exon
CTCATGGGACCAGGACTGAGAACCAGGAGGTCACTTCAGGAGAAATGCTGTTTGGGAGAGAACTGGACCCACTCAGGGGGAGTGTTCTCCGGGGACCTGAGCCAGGAGAAGTCCATGAGCGTGTCAGGGAGCCAGAGGGGCGCCTGGACAGGCCTGGGGAGCAGAGAGGCCCCAGGCTGGTCACACTGGCCAATGAGGAGTGTGGCCTGGAGTCTGGAGGAAACCTCAGGTCGCGGTCAAGGCCTGTCCCTGATCAAAGACCTCACAAATGTGATATATGTGAACAGAGTTTTGAACAGAGATCATACCTTAATAACCATAAACATGTACACAGGTGCAAAAAAACAAATATAGTTCACGATTCAGGGGAAATTTTCGCTGCGAATTTAGTTAAAGAAGATCAGAAAATTCCTGTTGGGAAAAGATTGTATTATTGTGGTTGTTGTGGGAAGGCCTTCAGGTACAGTGCTAACCTTGTCAAGCACCAGCGACTGCACAGTGAAGAGAAGCCCTACAAGTGTGAAGAGTGCGGGAAGGCCTTCCACCAGAGCTGTGAGCTCATCAGTCACCGGAGGATGCACTCTGGAGAGATCCCCTACCGTTGCGATGAGTGCGGGAAGACATTCAACCAGAGGCCCAACCTCATGAAGCATCAGAGGATCCACACGGGGGAGAAGCCCTACAAGTGCAGCGAGTGCGGGAAGCACTTCAGTGCCTACTCCTCCCTCATTTACCACCAGAGGATCCACACAGGGGAGAAGCCCTACAAGTGCAGTGACTGCGGGAAGGCCTTCAGTGACGGCTCAATCCTCATCCGGCACCGTCGGACCCATACCGGAGAGAAGCCGTACGAGTGCAAAGAGTGTGGCAAAGGCTTTACCCAGAGCTCCAATCTGATCCAGCATCAAAGAATTCACACTGGGGAAAAGCCCTATAAATGTAATGAATGTGAGAAAGCCTTCATCCAAAAAACCAAGCTTGTTGAACATCAAAGAAGCCACACCGGAGAGAAGCCCTATGAGTGTAATGACTGTGGCAAAGTCTTCAGCCAGAGCACCCACCTCATCCAGCACCAGAGGATCCACACAGGAGAGAAGCCCTACAAGTGCAGTGAGTGTGGGAAGGCTTTCCACAACAGTTCCAGACTCATCCACCATCAGAGGTCACACCACGGAGAGAAGCCATATAAGTGTGCTGATTGCAAGAAGGCCTTCAGCCAGGGCACGTACCTCCTGCAGCACCGGAGGATCCACACCGGGGAGAAGCCTTACACGTGTGGCGAGTGCGGCAAGGCCTTCCGGCACAGCTCCAACATGTCCCAGCACCAGAGGATTCACCTCCGGGAAGACTTCTCCCTGTGACAGTCGGGAGGCCCAAGGTCTGTGGTGCACTTCCCCCACGTGACCACCCTCTCTTTACTTACTGTCCACATGGTGTCACAGGTGAACAGGCACTTCTAATTTTTAAAAACCTCTTTCTTAAAAGCAGTGGATGTTCATTTTAGAGAAATTGAGTGGAAAAAGGTAAGCAAAAGGGAGAAGCCCTGTGGCCTACCCTTAGAAAGAGAACTCACTACTATTGCGATCAGCGTAGGTTGTGTCCAGACACTCAAATAGCATCCACAAGAGAAGTACTGTGGAACTTGTGAGAGCAGCTCCTGTTTCCTCAGTCCTGGAAAACTCATACTGGAGAGTTGTACGTGTTTATGTGGTTTTACACCTTGTAAATTTTAAAACAGCATGTTGTTCATACTTTTTCTATGTCACTTAATAGAATTGATATTGCCTTTTTTATTGTGGTAATAACATTGTGTGTTAGTCACTCAGTCGTGTCTGACTCTTTGTGACCCCATGGGTTGTAGCCCGTCAGGCTCCTCTGTCTATAGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAGTAAAAACATGTTTACCATTTTAACCACTTTTAAGTGTACTACTCAGTGGTATTGGATACATTCACAGTGTTGTATGACCATCAGCAAATCTGTTTCCAAAACTTTTTTTATTACAAACAGAAACTCTGCACTCCTCCACTTTTCCTTATCCTCTCTCTTAAGAATTTGCTTACTCTGAAGTACCTCGTGTAAGTGAGGTCACACATTTGCCTTTGTGTCCTGGCTCATTTCACTTAACGTAAGGTCTCTTCATGGCTGAAGCGTACTCCATTGTTTGCAGACACCATGTTTTTTGTTCACCCATCATCTGTTGATGGGTTATGGGTGTTTCTGCTTGTTGACTTTGTGCATAATGCTGCTGTGAACATTGGTGTACAAATCTGTGCTTGTACTTTCCATTCTTCCAATACTTTGCGGGTATAATCCCAGGAATAAAGTTGATGGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012353:ENSBTAT00000049839:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.518 A=NA C2=0.226
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.1),PF0013017=C1_1=WD(100=12.6),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF0013017=C1_1=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF0013017=C1_1=WD(100=11.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGATTGCACAGTTGGAGC
R:
TCTTTGATCAGGGACAGGCCT
Band lengths:
344-2206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development