HsaINT0186960 @ hg38
Intron Retention
Gene
ENSG00000196378 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:HGNC:13098]
Coordinates
chr8:144773114-144777577:-
Coord C1 exon
chr8:144777458-144777577
Coord A exon
chr8:144774606-144777457
Coord C2 exon
chr8:144773114-144774605
Length
2852 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
TGTTCTGTTTTTTGTTTCAGCTC
3' ss Score
11.74
Exon sequences
Seq C1 exon
GAGTAGGACCTGCAGGCCCCAAGCCTGGAGTGATCTCGCAGTTGGAGCGAGGGGATGAGCCCTGGGTCCTGGATGTTCAGGGCACCTCTGGGAAAGAGCACCTGAGAGTCAACAGCCCAG
Seq A exon
GTGCGTGAGGGGATCTGCTCCCCAACTCAAGTCACCGAACGAGCCTTTATTGGGGTCCAGGGTGTCTGATTAATGAATCAGGAGTTTGTGGGCCAGATTCATCGGGGCTAGCACAGGAGGCCTGACAGTGGCCTTTGCTGAAGCCCAGGTGACCCCTCTCAGTCTGGGCACCTTGGTGGGGAGATTATTGAGCAGAATCTCTCCAGGGCAGCATTTCTGTGGAAAATAGGAATGGACATTCCAGGCAAGGTCCCGTGTAGAGGGGAGTGAGTAGGTGCAGAACAGGGGTGCTGTTAGGGTCTGCGGAACCCCACAGAACCCTGCGCTCCAGAGCTGATGCCAGATAATGAGGGCCTAATGATGGAGCTATCATTTAATTCCCCTCTCTTCTAAATTAATACACTGCGGAAAAGTGAGAGACTACACATCACCCTGAATCTCACTACCCAGACATAGTTGTGTTGTAGTATATTTCTGCTATTCCTTTTCTAGCACTGGCCTTTCCACTGTTATGTACTGACACTGCTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCGCCCTCTATCACCCAGGCTGGAGTGCAGTGGTATGATCATGGCTCACTGCAGCCTTGACCTTCTGCACTTAAGCGATCCTCCCATCTCAGCCTCCCGAGTAGCTGGGACCACAGGCATGTCATGTGTCACTCACACTAATTTTTTGATTTTTTTACAGAGACGAGGTTTCACTGTGTTGCCCAGGCTTGTCTCGAACTCCTAGGCTCAAGCGATCCTCTCGCCTTGGCCTTCCAAAGTTCTGGAGTTAAAGTGTGAGCCACTGCCACTGCACCTGGCTCAGATGCTGTTGCTTTTTTATTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTTAGTTCACTGCAACCTCCACCTCCTGGTTTCAAGCGATTCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCCGCCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACTGTGTTGACCAGGCTGGTCTCAAACCCCTGGGCTCAAGCGATCCTCCCACCTTGGCCTCCCAAAGTACTGGGATTATAGGTGTGAGCCATTCTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTGGAGGGCAGTGGTGTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTTTTGCCTCAGCCTCCCCAGTAGCTGGGACTACAGGTGCACGCCACCATGCCTGGCTAATTTTTGTATTTTTAATAGAGACGGGGTTACACCGTATTGGCCAGGCTGGTCTCAAGCTCCTGACCTTGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGCCACTGTGCCTGGCTGACACTGCTTCTTAACAGAAATGATAGTGTGTTCTGCTGTGCAGACACGGAATGTGTTTCCATTTCTGTGCGCATGAGTCTCAGTCATGTCTTCAGTGCAAGTGCAGGCCAAAAGATTGGATAGCTCTGATGGTCACCTTTTTGCATGTGTCTGATGGTGTCTGAGGAAGGAACTGCTGGCTCAAAGGACTTCTTATTTTGTAAATTTGCTTATTTGAATGTAAATATCTATAGAAATAGGACAAACCCTAAGTTTATAACTCAGTGAATTTTTATGAAAAATCATCCTTCAGATTAAAATACAGACTGTTTCCGCTCCCCAGGAGCTCCCTGGCTCTCCTCTGCCATTTCCCACTGCTCCCCACAGGGGTCTTCTTTCTGACTCCTGTCACAAGAGGCTGCTTCCTCCTTTGGATTTTTCTGTGTAGACTCACACAGGGCATCTTTTGCTGAACACTGTGAGAGCTGCTTGTGTTTCATGGAGTAGCAGTGTGGTCTGTTTGGTTGCCATTGTTCTATTGTATGAACACACCACAACTTATGTTCCCTTCTACTTGTGGAGGACATTCAGTTGTCCAGGTTTGGGGTTGTACAGGAACTGCTGTGGACACTCTTGTGCATGTCTCTCTCTGGCGCCCGGAATACATTTCTGGCGCGTGTGTACCTGGGAGCAGAGTCACTGAGTCAGCATTTTCATAGATCAGCTTTAGATAAGGTTGCCAAGCCGTCCTCCAAAGCAGCAGCTCCAGCATAGGCTCCTGTAGTAGTGTGTGAGCACCGTCTGCTGCACATCTTGGCAGATATTGGTGTTCAGCACCTGTTCATGTGCAGTGCAGAGCCAGGCAAGGGGTGGAAGGATAGACCCCTTAGGACTAGGAAGAGAGCAGTAATGAAAGTGGCAGTCATGAGGTGCTTGCACCTGGAACTCACTGTGCTGGGCACTGGGCTGAGTGCTTCATGGTCAGTCTGTTGTATTAATCTGTTTTGTTCTCATGAGAGTGCCATGTGGTCACAGATGGAGAAACCAAGGCTCAGAAAGGTAGGTGAGTTGTTGCCTCAGGTGACTCAGCTGGCAAGTAGGGGCCAGGACTAATCAATCCTGACTGTGGCTGCTGGTATCAGTCTCTGAGCGGCCATGTGGCAGGACCCCACTTGGGTACTTGTCACTCTCCATTCTTGGGGAGTGGCCACCCAGGAGAGGTTTGTTGTGTGAGTGTCAAATCAAGGAAGGAAGGAGTGAATGTTTGAAGGGCTGTATGACTGTGGCCCCAGGTGAGCTGCATAAGCCTCTGAGCTCCAGGCTCTTATCTTTGCAAGGCTGTTGGGACTTTGGAGATGATCAAATTGGTTCCCCACAGGTGGCCAGCAGCATCTCATGCCTACCTTCCAGAGTCAGAGCAGGTGACCCTTAGATGTTCTGTTTTTTGTTTCAG
Seq C2 exon
CTCTTGGGACCAGAACTGAGTACAAGGAGTTGACTTCACAGGAGACATTTGGTGAGGAAGATCCCCAGGGATCTGAGCCAGTAGAAGCCTGTGACCACATCAGTAAGTCAGAGGGGAGCCTGGAAAAGCTAGTGGAGCAGAGAGGCCCCAGGGCAGTCACACTGACCAACGGGGAGAGCAGCAGGGAGTCTGGGGGAAACCTCAGGTTGCTGTCAAGACCTGTTCCTGATCAGAGACCTCACAAATGTGATATATGTGAGCAAAGTTTTGAACAGAGATCATATCTCAACAACCATAAGCGTGTACACAGGTCAAAAAAAACAAATACAGTTCGTAACTCTGGGGAAATCTTCAGTGCAAACTTAGTTGTTAAAGAAGATCAGAAAATTCCTACTGGGAAAAAATTGCATTATTGCAGTTACTGTGGGAAAACATTCAGGTACAGTGCCAACCTTGTCAAGCATCAGCGGCTTCACACTGAAGAGAAGCCCTACAAATGTGATGAGTGTGGGAAAGCCTTCAGCCAGAGCTGCGAGTTCATCAATCACCGAAGGATGCACTCAGGAGAGATTCCCTACCGGTGTGACGAGTGTGGGAAGACATTCACCCGGAGGCCCAACCTCATGAAGCACCAGAGGATTCACACTGGGGAGAAACCCTACAAGTGTGGGGAGTGTGGGAAGCACTTTAGCGCCTACTCTTCCCTGATTTATCACCAGAGAATCCACACCGGAGAGAAACCCTATAAATGTAATGACTGCGGGAAAGCCTTCAGTGATGGCTCAATCCTTATCCGACATCGTCGGACTCACACCGGAGAGAAGCCATTTGAGTGCAAGGAATGTGGCAAAGGCTTTACACAAAGTTCTAACCTTATCCAACATCAGAGAATTCACACTGGAGAGAAACCCTATAAATGTAATGAATGTGAGAAAGCTTTCATTCAAAAAACCAAACTCGTGGAACATCAGAGAAGCCACACTGGAGAGAAGCCCTATGAATGCAATGACTGTGGCAAAGTTTTCAGCCAAAGCACACACCTCATCCAGCACCAGAGAATCCACACAGGAGAGAAGCCCTACAAGTGCAGCGAGTGTGGGAAGGCCTTCCACAACAGTTCCAGACTCATCCACCACCAGAGGCTGCACCACGGAGAGAAACCCTACAGATGCAGCGATTGCAAGAAAGCCTTCAGCCAGAGCACGTACTTGATTCAGCACCGGAGGATCCACACCGGGGAGAAGCCCTACAAGTGCAGCGAGTGTGGGAAGGCCTTCCGGCACAGTTCCAACATGTGTCAGCATCAGCGGATTCACCTCCGGGAGGACTTCTCCATGTAACAGTGGCGCGGTGTCCGAGGGCAGAGTCCAGCTGAGCACTTCCTGCATGCGCCCCCGGCACCTGACTCTGCCCTTTATGTATTATCCACACGATGTTTTCACAGAGTGAAAGGACGTTTCTCATTAAACAAACCTCTTTTCTTAAATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196378:ENST00000429371:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.699 A=NA C2=0.261
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.1),PF0013017=C1_1=WD(100=11.9),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF0013017=C1_1=WD(100=11.9),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains