BtaINT0166003 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046866 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]
Coordinates
chr14:2282248-2282762:+
Coord C1 exon
chr14:2282248-2282361
Coord A exon
chr14:2282362-2282718
Coord C2 exon
chr14:2282719-2282762
Length
357 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CAGTTACAAGGAACTGAAAACCC
3' ss Score
-19.92
Exon sequences
Seq C1 exon
GAGTTCCAGAATCCAAGCCAGATCTCATCTCCCAACTGGAGCAAGGAAGGGAGCCCTGGGGCTCAGACCTGCTGGGGGCCCAGGAAGCAGAGACTTCGGGAAATGCCGGCATGG
Seq A exon
GTGAGTGAGGGGAGCCACAGGCCTCTGGTTGTTCAGTATTTGCACTCACCATACACAGCCAGTGTTGTGAACAGCCGGATAGAAGGACAGTCACACAGTCACAAAGTGCACTTTCGTTGGCTTGTCCCTTGGTGTCCTTACCCAGGCACATGGACGCCCATCAATTGAAAACAGGCAGCCAGTTAGCGGTGAAGGGGTAAAGACTGTGATTGTTGCCCTTCCCCTTCATTGAAGATTGAGGACAATTTTCTGGGAGTCCAGCACCATGCCAGATGCTTAACAAATTGTGCCTCACTTTCTCCCCCAACAGCCCCATGGGATGAGTTATCAGAACCCTCAGTTACAAGGAACTGAAAA
Seq C2 exon
CCCAACCAAACCAGCCAGAGCTGGGGGGAGGCTCTTGGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046866:ENSBTAT00000063252:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=NA C2=0.867
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development