HsaINT0185565 @ hg38
Intron Retention
Gene
ENSG00000189420 | ZFP92
Description
ZFP92 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:12865]
Coordinates
chrX:153420228-153426481:+
Coord C1 exon
chrX:153420228-153420332
Coord A exon
chrX:153420333-153420642
Coord C2 exon
chrX:153420643-153426481
Length
310 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CTGGTGCTCTGTCTTTCCAGGTG
3' ss Score
12.32
Exon sequences
Seq C1 exon
GATTTTCCTTCTCCAAGCCTCACCTGATCTCCCAATTGGAACGAGGGGAAGGACCCTGGGTAGCAGACATCCCCAGAACCTGGGCCACCGCAGGATTGCACATAG
Seq A exon
GTGAGTGAGAGGTGCTCAACCAGCTCCCCATCGGGGTAAAAAGAAATAGCAGTGGCAAAGGGGGCGGGGGAGGGTACCCTGCCGCTTTGGGTGGGAAATCCTCTTTGGAGGCAGATGTCAATCTCCAGGTGTCACAGCAGCCCCGCTATCTCCAGCCCATCCTCCCGCCCCTTCATCTCTCCTGTCTGCCTGTGTGATGGCTTTCTGTTCTGTGGTCACCTTGCCCCATCCCCCTATGTTCTCACCTCCTGCTCGTTCATCTCTCTGACTTGGCATGAGGGTGACACTGCCTGGTGCTCTGTCTTTCCAG
Seq C2 exon
GTGACAGAACACAGAGCAAGACGTCGACTTCAACGCAGAAGCATTCTGGACGACAACTCCCCGGGGCCGATCCACAAGGTGGCAAGGAGGGGCAGGCGGCGAGGTCGTCTGTGCTCCAGAGAGGTGCCCAGGGCTTGGGGCAGAGTTCGGCTGCGGGGCCGCAGGGCCCCAAAGGCGCGGAGAAGCGGTACCTGTGCCAGCAGTGTGGGAAGGCCTTCAGCCGCAGCTCCAACCTCATCAAGCACCGCATCATCCACAGTGGCGAGAAGCCTTACGCGTGCCCCGAGTGCGGCAAGCTGTTTCGCCGCAGCTTCGCGCTCCTGGAGCACCAGCGCATCCACAGCGGCGAGAAGCCCTACGCCTGCCCCGAGTGCAGCAAGACCTTCACGCGCAGCTCCAACCTCATCAAGCACCAGGTCATCCACAGCGGCGAGCGGCCCTTCGCCTGCGGCGACTGCGGCAAACTGTTCCGCCGCAGCTTCGCGCTCCTGGAGCACGCGCGCGTGCACAGCGGCGAGCGGCCCTACGCGTGCCCAGAGTGCGGCAAGGCCTTCAGCCGCAGCTCCAACCTCATCGAGCACCAGCGCACGCACCGCGGCGAGAAGCCCTACGCCTGCGGCCAGTGCGCCAAGGCCTTCAAGGGCGTCTCGCAGCTCATCCACCACCAGCGCAGCCACAGCGGCGAGCGGCCCTTCGCGTGCCGCGAGTGCGGCAAGGCCTTCCGTGGCCGTTCGGGCCTCAGCCAGCACCGGCGCGTGCACAGCGGTGAGAAGCCCTACGAGTGCAGCGACTGCGGCAAGGCCTTCGGCCGGCGCGCCAACCTATTCAAGCACCAGGCAGTGCACGGCGCCAGGCGCCCTGCGAAGGCGGAGACGGCGCGGAGGCTAGCGGGCCCTGGGAGCACCGGCCCTGGGAGCGCGGTGGCGGCCACCAGCCCCCCGCGGCCGAGCACAGCCGCCAGGCCTTCCAGGCCCAGCCGCCGCTGACTCCCCGCCAGCGCACCCAGGGCGCGGCCGGTCTGCGTGGGGGGCCTTCCTGGGGACGTCGAGGCTCAGCCCCCTTCAGGTGGGAAGACCGCCCTCCCAGGGCCTCGATTGCGGCCACAGCCCTGACCTCTTTGGCCATCAGAAGACCCCAGGCAGAGCCTCACCCTGAGGCTGAGAAACGCAGGAAGGACTCAGAACCGAGGACTGCCGCCTGCCCTGGCTCCTCCATCAACGGCAGTGCGGGCTGGGAATGGAGGCCCTCTACTCCCTCCTGAGTCCTGGGCCTTGCAACTGAGGCACATAGATGGCACCTGGGCCACTCGTCCCTGAGCCACAGGTACTATCGAGTGTGCACAGGCGTGCGTGGAGGGGATGCGTGAACCATCCCTCGGATTTGCATCAGAATCGCCTGCTGCGGGTAGGGAGGAGGCCACGTGAGGCCAGTGAGGCCAGCCAGCGCGGGGCACGCTGGCTTTGAGTTACAGAAGAGTGGTGCATTTCCTCCCTGGGGGTCGTTCCCCTCGCCCTAAGAGTTGTTAGTGTTCCCAAGTAGAAGATACTGAAAGCACTTTAATCCTTTAAGCGCTTATATTGCAGGTGGGGGAGGCGCTAAAGTTAGCACAGAGGCAAGAGGCTCCCTGAATGTTGGCATAGGATGGGGGGCTGTGCCAGAAAACTCCCGCCTTGTCTGGGTGGCCCCAGCTGCTTCTGGGAGGAGGAGCAGCGCCCAGGCCCCATCATCCCTGAGCACCAGTGGTTCTGGGAATGGCTAGCCCAGGCCCTGCAGAGAGGATAAGACCCTTCAAGTCACTCACAATTGGACATTTGTAGCTAGCCACCCTCCAGGCTTTGCTTTCCCCCCTGCCCGCCCACTGCCTTCTGCTCCCCAGACCCCACCAGCAAAGGCCACCCTGGCCTCTCTGTCCCCTGTCCCCCTGCCCCGCCCCACCACCAGTGCCTAAAGCTTCGCACTTACCTGCTCCTCCCCATCAGGCAGCCTCTCTTGCGGCTGGTGACGATTAGGAGGAAAGCCAGACGGGTTAGGAATTTGCACTTAGGCAACAGAGCAAGCCCAGGAACGAATCTTTCATCGAATGTCTTTTGCGTGACATTTTGTAGAATACTGGACGTTCCGTTGCTTTGATTGTTTTTGTATTCAGGGGTAATGTATATTGAAAATAGAGATTTTGCCATATCAGAGTATCAGGGATTCACTCCCTAAATAAGAGTCCCCCCAGCCCTCTGAGAAGACCTCAGGCAGGAGAAAGGGGGCCACCCCAGGCCTGCCCCCAGATGAGTGTGGTGGCAAGCCTGGCCCCTCTTCTCCCTACAACGATGCAGTCCACCCCTCTTCCCCTTAGCCCTGCAGAAACAGGGCAGACTCTTCAAATGGCACTTTACTGAAAGCCAAGGGGAATTCTCAAGGAAAAGTCTCAGGGCTGGCAGAGGCAGCTGCTGGCAGGCCTTATCCTAGTTCCCCAGCGCTGTCCCCAGAGCTGGGCTCAGGAGCTCTGCCCCTTGGTGCTCTCAGCCCAGCGTCCTGGTCAGCGGCCACCTCCTTCCAGCCCTGTCCCCTCCCAGGGGAGAGGGGGTTTTTCATCCACAAGGCCTGAGGGCAGGTGGGTGGTAGGCGTGGTGGAGGGGGGAGGTTCAAAGACAGCTGGCTCCTATCAGGAGAGTGTGGGAAGACCCAAACATACAGGATTCCCTCGGAGAATGCTGCTTGGAGTGCCAGTCACTAGGACAACTCCAGAAATAATGTTATACACACACACACACACACACACACACACACACACACACACGATATATATAGTTTTATGAAAACTTCTAGAGTTCTTGTAAGTTGCACTTATACCGTAGCCTCCTTCAGTGTGTCCCTATTCCCCATCCTGTGATTGCGTTCTTGTCTGCAAGCTGGTCTCATAAGCCCACAAGTGTGTGTCATGCCTGTCCCCATGTCCTTGATGCCAAGCCCGGTGCTGGTAATCAGTAAGCATGAGTGAAATAGGTCTTGCAGTCCTAGCACCTCAGACTCAGGCTTGGGACCATTGTCGGCTCCAGCCTTGCCTTGAGGCAATCCGAAGCATCTACGACTTTGGGTTTTCCAGAAAAAGAAGTATTAGGAATGGTGTATTTGAAGTCCCTGATGAGGCCATTGGGAAGTCTGGGTTTTTCTGCTGTGCAGACAGTCTTTGCAAGGGCTGGCATGGGCCCAGAAATGCAATCCTCGTGCAGAGTAGGTGCCTGTGGCAGGAGGCCATGCAATTGGGCTCTAGTCTTGCTTCATTCAACTGAACCAGGAAAGAAACAGATCCACGCACTCTGATACCCATTTCCGTTGTTCTAGGAGGTAAATGATTTCGTTCCTACAAGCCAGACAGTAGCCAGCTTTCACTAAAGAAGAATCGACTCCTTAGTATCTTGTCATGCCATTGGTTCTGATGCATAAGTGAACCCTGTTTTTAACGGAAGCTCCTTTTTTTTCACCTCAGGACCTACCCAAGACTGTCTAGATACTGGCAGGACAAGGTACAGGAGTTTTCAGCAGAAAGTGGAGTTGCCAGGAGAGATGCTGGGCACTTGCACTGTGACTTTGGAGTGCCGGGAAAAGTTCCAGGGTCCCCAGTGCTTACTTAGATAAATGGCATTTAAAATAGTGCAGCCTTTTATCATTGCTTAGTCTAATTTAGCTCCCCATAATGACATTCTCACTGCAAGGTGGTCATTGCTATCATTTTCTTTTGGGTGTGGCAGTTAGGTATGCCACGTGAGCTGAACGGGTTTCACATGGAATCAAAGTCAGAATGTTCGAAAAGGACATTTGTGTTTTTCCTTCAATGGTGCCTTGAAATTGGGCTCCCTCCCTCTTGCTGTGTGGGGAACTGGGAGGGTATAGCCCAAGCTTGCTTTGTGATGGACAGCTAGAATGTAAAAGCTTAAACTATGGGGAAAGTCTTGCCTGTTTTCCAAGGCTTCCTCCACCCTGCCACCGAAGAACTTACCTGGATGCCAACCTGGGACCCCTTTGTCTTTGGGCTTTTGCCCTTTGAAACTGTGAATGCTTCAAGAGCCACATAAATGCTCTGGCAGTGTCTCCATGTAACTAGTAAATTGTCCTGGCTGGATTCGTTGTGAAATGGAACTGTCCCATTTACTTTGGTTGCAAATAAGGAAGATGTATGAGTATTGGCCTGGAAATGAGCCCTCTAGTGTAGAGAGGTTATTCTGAGGGTTTAAACTACATGGATAGGCCTTGGGTTCAAGGTTACAGGAAAGGCTGTAAGCCTGAGATTGTGGGGAATGGCCAGAGCTGGGCTTTGGGTGTTCCTTGTGGGGGTCCCTGTGAAGGTAAGACAGAAAGGCATTCTGGGTGAGCTGCCTCGGGTCAGCCCAGGGGTGCAGGCTCCTCTGACTGGGACCACAGGCAGCCACCCGAGGCCACTCAGATGCCGTGACTCTGAGACCAGAGGGAAGGGAGGCTGGGCCTGGTCCCCTGTGTTCCTCAGCAAAGTGCCACATCAGTCTCCTGAGAACACAGCTGTGTGTTCTTTCCAGTCGCTTCTGTTCCCAGACTTCAGGCAACATGGCAGCTCCCATACTTGCCAGGGTAGTTGGAAGGGCAGCTCTGGAGACAGGAAGTGGAGGTAGAAGCAAAGGAAGGGAGTCCTTGGCTGGGAAGTGCTTGGGTTCGGACAGACAGGGAAGAAGGGAAAGTATGAGGTGTGTTCAGGGAAGCTTAGAAGGGCAGAGAGGTTTCAGTAGGACATGTATGGGCTAAAGGGTCAGTTAGAACCAGAGTATGGAGAGTCTGGGATGCCATATACAAAAGTTTGGGCTCTAACAGTCTCCTGATGAGGAGCAATTTTCCAAAACATGAAAGAATTATTCTAAGAATGACAAAGGGAAGTTAATATAAATTATGACTACCACAGGGTTTGAATTTACACACTGACCACCACAAATTTTATAACTGTAGTCGTCTCGATGGTTGTGATGCCCATGAGGTGTTGGGCTGGGGGCATGATGACGCTGAGGCAACATGAGAGGGGACGTCTTTGACACCAGGGCCCCAGCCACGTGTCTCAGGGGCTCCCACTTGCCATGGGACTCGCAGCTGGTTCCATCCGATGCCAGCCCCAGTGCATCTATCACTGTCTTCACAAAACGGGGGTCCTCCAGGAGTTCTGGACAGCTGCTCTGCAGATTCTTATATACCTTTAATCGAAGGCCTTGGACTTTTGAGAGGAGCGCAGTGCCCTCCTTTTGTGTTCAGGAAGGCCAAATTAGAGCCTTCTCCACCGCCGGGGAATATTCATGTGGGAAATGGAGGCCTGCTGCAGACCTGAAGGTCAATGATTGTTTAATCTTTCTTTGACAGCATTATGAAGGTATAATGGGCATACAAGAAACTGCACGTCTTTAAAGTGTACAGTTGGAGGGTTTTTGGCATGTGTGGACACCCATGAAACCTCCCCCATAATCAAGACAGTGAATTGATCCGCCACTCCCAAAAGTGGCCTTGCGCCTCCAGCAACCCCTCTTTCCTGCTCCTCACTGTCCCCCATCCCCACCGCCACTGCTTGGCTTGCTGTCACTATAGATTAATTCCCATTTTCTAGAATTCCATAGAAATGGACTCATACAGTGTATGTCTGGCCTCTTTCACTCAGCACAATTCTTTTTTCATCAGGTGTTTTTGTGCATATCAGTACTCCATTTTTTTTTATTGTTGGTAGGATCCCATTGTATGGGTGGACCACAATACCTGTTGAATACCTGTTGATGGACATTTGGGTTGTTACCAGGTTTTGGCCATGACAAATAAAGCTGCTGTGAACATTTGTGTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189420:ENST00000338647:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.393
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF054957=zf-CHY=WD(100=24.0),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTCACCTGATCTCCCAA
R:
GGATGATGCGGTGCTTGATGA
Band lengths:
346-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains