RnoINT0168749 @ rn6
Intron Retention
Gene
ENSRNOG00000051836 | Zfp92
Description
zinc finger protein 92 [Source:MGI Symbol;Acc:MGI:108094]
Coordinates
chrX:157389916-157391091:-
Coord C1 exon
chrX:157390990-157391091
Coord A exon
chrX:157390667-157390989
Coord C2 exon
chrX:157389916-157390666
Length
323 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GGGTGGCTCTGTCGTTACAGGAA
3' ss Score
7.65
Exon sequences
Seq C1 exon
GATTTGCTTTCTCCAAGCCTAACCTGGTATCCCAGCTGGAGAAAGGGGAGAAGCCCTGGATTAGGGATGGTGGAATGGAGAGTGCGGCAGGATCCTGTACCG
Seq A exon
GTGAGCAAGGTACCCTCAGCTAACTTGATAGTGTCAGGAGTAAAACGGGCTGGCCCACGGAAGGAAGGTAATGTGGGCTGGAACTTTGGGTGAGAAGCCCTCTTTAGTGAGGATGTTAGTCCCCCAATGTTCCCTTCCTGCTGAGACTAGATGAAGAGAGGCTTATCTGCCATGGTGTTACTAGTTCTGCCCACTTAACAGCATACCCTCCTTCTGCAATCCCTTCTGTCTGCTTGATGGTTCCCTGATAGGAAGGTGAAAAGAGGGGAAACACTCCACAGAAGCCCAGGGAAGTGACACTGTGGGTGGCTCTGTCGTTACAG
Seq C2 exon
GAAATAGGATAAAGAGCAAGACTCTGACTCCAAAACCGAAACTTTTTGGAAGAGGTCTCCTCAGAGACACCTCGGGATCCTCACTGCAGAGACGTCCTCATGATTTCAGGCCAAATCCCATTGTAAGGTACCAACACTCCAGAATCGCGGATAAGCGGTATCTATGTCAGCAGTGCGGAAAATCCTTCAGCCGCAGCTCCAATCTCATCAAACACCGGATCATCCATAGCGGTGAGAAACCGTATGAATGCAGCGAGTGTGGGAAGCTGTTCAGGCGCAGCTTGGCGCTGCTGGAACATCAGCGCATCCACAGCGGCGACAAGCCTTATGAATGTGGTGAGTGTGGCAAAACCTTCACGCGCAGCTCCAACCTTGTCAAGCACCAGATCATCCACAGCAGTGAGATGCCGTTCATGTGCCGCGTGTGCGGCAAGGTGTTCCGGCGCAGCTTCGCGCTGCTTGAGCATGCGCGCATCCACAGCGGCGAGCGGCCCTACGAGTGCTCTGAGTGCGGCAAGGCATTCAGCAGAAGCTCCAACCTCATAGAGCATCAGCGCACCCACAGCGGCCGGAAGCCCTACATCTGCCAGGAGTGCGGGAAGGCCTTCAAGGGCATCTCGCAGCTCATCCACCACCAGCGCAGTCACCGTGGTGACCGGCCCTTTGCGTGCGGCGAGTGCGGCAAGGCCTTCCGAGGCCACTCAGGGCTCAGCCAACACCAGCGGGTCCATAGCGGCGAGAAGCCCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051836:ENSRNOT00000085139:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF054957=zf-CHY=WD(100=31.1),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=9.6),PF134651=zf-H2C2_2=PU(48.4=6.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTGGAGAAAGGGGAGAA
R:
CCTGAACAGCTTCCCACACTC
Band lengths:
346-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]