Special

HsaINT0185565 @ hg19

Intron Retention

Gene
Description
zinc finger protein 92 homolog (mouse) [Source:HGNC Symbol;Acc:12865]
Coordinates
chrX:152685686-152687086:+
Coord C1 exon
chrX:152685686-152685790
Coord A exon
chrX:152685791-152686100
Coord C2 exon
chrX:152686101-152687086
Length
310 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CTGGTGCTCTGTCTTTCCAGGTG
3' ss Score
12.32
Exon sequences
Seq C1 exon
GATTTTCCTTCTCCAAGCCTCACCTGATCTCCCAATTGGAACGAGGGGAAGGACCCTGGGTAGCAGACATCCCCAGAACCTGGGCCACCGCAGGATTGCACATAG
Seq A exon
GTGAGTGAGAGGTGCTCAACCAGCTCCCCATCGGGGTAAAAAGAAATAGCAGTGGCAAAGGGGGCGGGGGAGGGTACCCTGCCGCTTTGGGTGGGAAATCCTCTTTGGAGGCAGATGTCAATCTCCAGGTGTCACAGCAGCCCCGCTATCTCCAGCCCATCCTCCCGCCCCTTCATCTCTCCTGTCTGCCTGTGTGATGGCTTTCTGTTCTGTGGTCACCTTGCCCCATCCCCCTATGTTCTCACCTCCTGCTCGTTCATCTCTCTGACTTGGCATGAGGGTGACACTGCCTGGTGCTCTGTCTTTCCAG
Seq C2 exon
GTGACAGAACACAGAGCAAGACGTCGACTTCAACGCAGAAGCATTCTGGACGACAACTCCCCGGGGCCGATCCACAAGGTGGCAAGGAGGGGCAGGCGGCGAGGTCGTCTGTGCTCCAGAGAGGTGCCCAGGGCTTGGGGCAGAGTTCGGCTGCGGGGCCGCAGGGCCCCAAAGGCGCGGAGAAGCGGTACCTGTGCCAGCAGTGTGGGAAGGCCTTCAGCCGCAGCTCCAACCTCATCAAGCACCGCATCATCCACAGTGGCGAGAAGCCTTACGCGTGCCCCGAGTGCGGCAAGCTGTTTCGCCGCAGCTTCGCGCTCCTGGAGCACCAGCGCATCCACAGCGGCGAGAAGCCCTACGCCTGCCCCGAGTGCAGCAAGACCTTCACGCGCAGCTCCAACCTCATCAAGCACCAGGTCATCCACAGCGGCGAGCGGCCCTTCGCCTGCGGCGACTGCGGCAAACTGTTCCGCCGCAGCTTCGCGCTCCTGGAGCACGCGCGCGTGCACAGCGGCGAGCGGCCCTACGCGTGCCCAGAGTGCGGCAAGGCCTTCAGCCGCAGCTCCAACCTCATCGAGCACCAGCGCACGCACCGCGGCGAGAAGCCCTACGCCTGCGGCCAGTGCGCCAAGGCCTTCAAGGGCGTCTCGCAGCTCATCCACCACCAGCGCAGCCACAGCGGCGAGCGGCCCTTCGCGTGCCGCGAGTGCGGCAAGGCCTTCCGTGGCCGTTCGGGCCTCAGCCAGCACCGGCGCGTGCACAGCGGTGAGAAGCCCTACGAGTGCAGCGACTGCGGCAAGGCCTTCGGCCGGCGCGCCAACCTATTCAAGCACCAGGCAGTGCACGGCGCCAGGCGCCCTGCGAAGGCGGAGACGGCGCGGAGGCTAGCGGGCCCTGGGAGCACCGGCCCTGGGAGCGCGGTGGCGGCCACCAGCCCCCCGCGGCCGAGCACAGCCGCCAGGCCTTCCAGGCCCAGCCGCCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189420-ZFP92:NM_001136273:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

NonCoding

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF097235=Zn-ribbon_8=WD(100=13.4),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF054957=zf-CHY=WD(100=24.0),PF134651=zf-H2C2_2=WD(100=7.9),PF127602=Zn_Tnp_IS1595=WD(100=16.4),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.6),PF054957=zf-CHY=WD(100=25.2),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.9)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTCACCTGATCTCCCAA
R:
GGATGATGCGGTGCTTGATGA
Band lengths:
346-656
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains