MmuINT0180044 @ mm9
Intron Retention
Gene
ENSMUSG00000031374 | Zfp92
Description
zinc finger protein 92 [Source:MGI Symbol;Acc:MGI:108094]
Coordinates
chrX:70666562-70672326:+
Coord C1 exon
chrX:70666562-70666663
Coord A exon
chrX:70666664-70667003
Coord C2 exon
chrX:70667004-70672326
Length
340 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CTGTGGCTCTGTCATTACAGGGA
3' ss Score
7.72
Exon sequences
Seq C1 exon
GATTTGCTTTCTCCAAGCCTAACCTGGTATCCCAGCTGGAGCGAGGGGAGAAGCCCTGGATTAGAGATGATGGAATGGAGAGTGCAGCAAGATCCTGTGCTG
Seq A exon
GTGAGCTAGGCACCCACCTCAGCTAACTTGACCATGTCAGGGATAGAAAGGGCTGGCCTAAGGAAGGTGATGTGGACTAAAATTCTGGGTGAGAAGTCCTCTTTAGTAAGGTTGTCAGTCTTCCCAATGCTCCCTTCCCATACTGTGACTAGATGAAAAGACACTTATCTGCCCTCGTGTTACCAGTTCTGCCCACTTTCCAGCATACCTTCTTTCTGCAGTCCCTTCTTTGCCTGCTTGATGGTTTTTTACTCCCCAGCTCCCTGATAGGAAGATAAAAAAGAGGGGGGAGAAACTCCACAAAGCCCAGGGAAGTGACACTGTGGCTCTGTCATTACAG
Seq C2 exon
GGAATAGGATAAAGACCAAGACTTTGACTTCAAAACCAAAACTTTTCGGAAGAGGTCTCCTCAGAAATACCTCACGATCCTCATTGCAGAGACGTCCTCACGATTTCAGGCCAAATCCCATTGTAAGGTACCAACACTCCAGAATCGCGGATAAGCGATATCTATGTCAGCAGTGTGGAAAATCCTTCAGCCGCAGCTTCAATCTCATCAAACACCGGATTATCCACAGCAGAGAGAAACCTTATGAGTGCAGCGAGTGTGGGAAGCAGTTCCAGCGCAGCTTAGCGCTGCTGGAGCATCAGCGCATCCACAGCGGCGACAAGCCCTATGAATGTGGCGAGTGTGGCAAAACCTTCACGCGCAGCTCCAACCTCGTCAAGCACCAGGTCATCCACAGCAGTGAGATGCCATTTGTGTGCCGCATGTGTGGTAAAGTGTTCAGGCGCAGCTTCGCGCTGCTTGAGCACACGCGCATCCACAGCGGCGAGCGGCCCTTCGAGTGCACCGAGTGCGGCAAGGCATTCAGCCGAAGCTCCAATCTCATAGAGCATCAGCGCATCCACAGTGGCCAGAAGCCCTACATCTGCAAGGAGTGCGGGAAGGCCTTCAAGGGCGTCTCGCAGCTCATCCACCACCAGCTCATCCACCGCGGCGACAAGCCCTTCACGTGCCATGAGTATGGCAAGGCCTTCCGAGGCCTCTCAGGGCTCAGCCAACACCAGCGGGTCCACAGAGGTGAGAAACCCTATGAGTGCAGCGAATGCGGCCGGGCCTTTGGTCGCCGGGCCAACCTCTTCAAGCACCAGGTGGTGCATGGTGGGGTGCGGCTCCAGCACCGCACTCGAGGGAAGGGATTCCAGCGCAAGCTCCTGGAGCATCTGCGGGACCTCCATGGGCAGCAGCCCCAAGAGGCTGGAGAAGGTAGCTCCGCAGAACCCCAGCCCATCGACACCAATGAGAAGCCCCAAGTTTGTGAGCGCTGCGGCCAGGTCTTCGAGAACAAGTTGCTGTTGTGTCGCCACTTGCGCATCCATGACGACGAAGATGACAAGAAACAGAAGCCTGTTATTTCGAGCACCTCAGTTTTGGAGGATAAGTCATTGCTCAGCCAACATCTGGAAGCCCAGCCCACAGAGGAAAGCGACAGCGAAGGCAGTGTAGTTTTCGTGTATGCTGAGAAGCCCCACGGTCCATCCTCACCTTGAGGCCAGAAACAGGGCAGCAGTTCAGAATGGCAGGATGGCCCCTTCCCCAGTGTGAAACAGAGAAGCAATTCAGAATGACAGAGTGCCCTCCACCTTCAGTGTAGTTTGTCCTGCTCCTTCCCTGATAGGTCGAAAAGGAAAGCTCCCTCCGTAGTCCTGGATGATACAATTGATGCCTAGAGATTGTACAGGCAGGCTCCTCAAGTTACCTAGGCAGGGTTCTCCTGTGTGTGCTTCGGTGTGTGAGTGCCTGTGTGAGTGGGGTCTCCAAGTGAGCAGATTTGTTTTATACAGAGTTGGTCTTTTCCATCCACATGGGAATTGCCTGATGTAGTTAGAAGGGAAGCAGGTAGGTCCAGCCGACTCTAGGCACAGTTACCATGAAGTTTACAGACAGATGACCCATGTCCTTTCCCTTGTTTAATGTGGGGTGGTTTCCTCCCCTTGAGAGTTGTGTTTCTAGGGAAAATATACTAAAGCTACTTTATTCCATTAAAAGTTTATAAATTGAAGGAGCTCTAAAATTGACTTGATGCTTTATAGGAAAGCACAGGGAACCTGCTGTCCTGGGGCGCAGGCTAGGCTATATGTGAAAACTTGGACCCTATTATGTACCCCTGCTGCTGCTTGGAGGGTCTGTACCAAAGCTGTCATCTTGCAGAGAGGTTAAAGTCCAGAGACCTGAGGGTCTCCATTTTGGGAAAGGAGCCTCTTTCCTCTGGTGCCTCATAGAAGAAGGGCGTAGGTAAGACATGGCCTCTTTGTGCCACTCCTATCCACTGTCTCAATACCTACAGTTTCTCTGCTAATCCCTTTCATGGAACCCATTGTGTGCTGATAACAGGTTAGGAGTTTGCACTTAGATGGCCCCAGAAATGAGTCTGGCCAGACAATTACCTTTCAGACAGATGACATTTGTTAGAATATTAAAGTTGCCATTATTTTAATATGCTTTTGTTTGCAGGTAAAAGTTGGGAAATGGAGATCTTTGTTATATGAGAGTGTTGGGGAATTGATCCTTTATAAAAATTCCTCAGGCAGAGGGTGTAGCTCAGAGGTGGAGTACATGCCTAGCAGACCTCGGGCCCTGTGTTCCATCCCTGACTCCTGCCCAAGCTCAGACAGGAGAAAGTAGCCTTTCCAGCCCATGACTGGTGAGTATGGTGGCAAGTCTGGCCCTCCAAGTGATATCACTCACACACACACATACACACACACATACACACACACACACACAAATACACACAAACACACATACACACACACACACACACACACACACACACACGTCTTAAGCCTGGTTGACTTTAATTAGAACTAAGGGGAAGGTGTTTTATAAGAAAATCTGTAGCAGTTCTATTCTGCCTGTGCAGAAACCCTGGAGATTTGTCCCTTGGTATACTCAGCTCAGCATCCTGGGCAGCAAGCTACTTTCCAGTCCTCTCATATCCCAGGAGGGAGAAAGATTTTCTCACAAAGCTGCCTGAGGGCAGGTGGGGGGTACGGGTAAAGTGGAGGCTGCCCTTGGGCACTCCAAGAAGAGTGATGGTACCTTCCCTGCAAGGTTAGTGAGGTTCAAAGACAACTGCCTCCTGCCAAGAGAGTATGGGAAGACCTGGAAACTTGGGATGCTGGTTGGGGCCCTGGTCACAGAATAACTTCAGATATTCTTACACAAATATGCACACACACACACACACACACACACACACACACACACACACACACACACGTTTTATGTATATAAAATGTTTTGTGTAAAGTTCTAGTTTATAGCTTGCTCTTATCTCCATGTCCTCCAGACTTGTCCTGTGATTGCTTTCTTTCTCATGAGCCTGCAGTTGTATGTTGTGCTCAGCCTTGTGTCTCCACTCCAAGTCCCATGTTGGATACTAGTGAAAGAGCCTTGCTCTCTTAGTGTACTGGACTTGGGCTATGTAGTAGTTGGCTTCAGTGGCTCCTGGACGCAGTCCAAAGTATCTGCTACCTTGGTTTCCCACTAGAAAATGAAATACTAAGAACAGTGTCTTTTAATTCCCTGGTGAAGTAACTGCTCAGACAGTCTCTCCTAGGGCTGGCACAGATACAGGAAACTAGGCCTCATGCAGTGCAGGTACCCACAGTGGGAGGTCCTGTGCAGACTGTCATGTGTTCTTAAATAATCATTTCCATGGCTCTAGGAAGGGAATGCATGATACCTATCCTGTAAGCCTGTCACCAGCTTCTATACCCAAAGATAAATCTCCAGAGAAGGGGTCATGTGTAGTTATTTTCAGCAGAAAGTGGGGTCTGCAGGGAGAGATGTAGAGCACTTTAGAGTGGAGTACCCTGAAATGCTCCAGAGTCCCCAGTGGTTGCTACATACCTAGCAACACATCTCAGTTTTCTACTGTAGTTCCGGTTCCTAGATGTTTTCAGCAGGCAGTTAGGTGTAGTAGGTTCTCTCAGGTATGGTAATCAGGTATGTAAAATGAACGAACAAGCTTCTCCTGGGATAAAGTCAAAATAACCAGAGGCGCTTGTGCTTTCCCTTGTTTTGTGCCTGAAAATTGGTCCATTCCTTATGCTAGATGGGGAATGGGGCTAATGGTTCATTTGTGTGTCTTGAGTGGCAACTAGATTATAAACGCTTAAACTATCAAAAACTCCTGCTGTTTTCTAGTCCCTCCTTTTTCTGTCTTCCCTCCATACTTTACCTTCAGACCATTTGCCTTTTAAGACTTTGGGTGCTTTTCAGGTGCTGTGTGAATACCCTGGCATTGTCTCCAGGAAACTGACAGATGGTCCTTTCTGAATTTATCATGAGGTGGAAGTTTTCAACATTTTTGTTGGTTGAAAAAAAAAAAAACATCTACTTGGAAAGAGTTTCCCATGTGTGGAGAGGGACTGCTTCCAGGATTAAACAGAGAGGTAGTGGGTTCAAAGTCAGAAGCAAGAGTCAACTCTGAGCTAGCAAGAGCCTACAGTGAGGCTAGGCTTATGGGGAAGGGGTTGTTTGCCATATGGGAGGGCCTGCCTTAGTCTGCCCAGGGTGCAGGCTTCTCACAGGGCTCAATACTGCAACTGCGAGATCAGGCCTGTGCAAAAGGCTCCTAAACAGAAAACTCCATGAAGAGGAACCACTATGCCTATCTTCTGTTCTGGGTTTGTTTATTTGTTTGTTTGTTTTTGTTTTGTGCTACCAAGTTTCAGGCAGCATGGAAGCACCCACCCTTACAGCTTTCCAAAAAGGAAGTAAAATATAGGGACTTCAGGTTTGGGGGTGGAGGTGTTGCTGAAAAGTGCCTTGGTTGGGAGTGAAGAGGATATAGTGTATTGGGGAAGCCCAGAATGCACACAGGTTTCTCTAGGGCAAGAGTCTTAGAGGGCCATTGTTTCATGAAACCACAGATGAATTGAGTCTAGGGGAAAGCATGGTTTTCTTTGGAGGTGTTATTTTAAGCCTGTGTGACCAGGCTGGCCTTTGACTCTTAATTCTCCTGCCTCTACCTCCTAAGTGCTGGAATTACAGGGTTGGGCCACCATGCCTGGGTTCTGAAGAGTCTTACGTTCTTATGTTGAAAGTAATATCAGTTCAAGCCCTTGCACATTTATGAGAGAAATGGTGCCTCCTTTTGTGTTCAGTAGGGCTAAGCCTGGTCCCTCTCCACCACCTAAGAATGATGAGAGCAGAAATGAAGGACTACTGTGCATCTGGAGGCTAGTGATACATTAACGTTCTTTGGCAGATTGATGGGGGGTATAGGTTATACAGCTTAAAGTGTACAAGTGTGGATGAGTTGTGATGGGTGTCTGTGCCCTTAATATCATCCCCACTGTTAAGTCCATGAACATTCAGCATCTTAGGCAGTAACTCCTCCTTTCTTCTCCTCCCTATCCCATCCTTACAACTACTGCTTTTTATCACTAGTGATTAATTTCTGTATAAATGGACTTCCACAGTGTGTGTCTGGCCTCTTAGTGACATTTTTAGATGTTTCCGAGTGTTGGTGTGTATATCCTCACTTCATATATATCCCAGTGTATAAATGGCCTCCAATACCTGTTGATGCCTGTTAATTAATATTTATATTCTTTCCAGTTTGAGACAAATAAAGCTGCTATGAGTATTTGTATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031374-Zfp92:NM_009566:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.2),PF097235=Zn-ribbon_8=WD(100=10.9),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.5),PF0009621=zf-C2H2=WD(100=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCCTAACCTGGTATCCC
R:
CCACACTCGCTGCACTCATAA
Band lengths:
352-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: