HsaINT0188064 @ hg19
Intron Retention
Gene
ENSG00000083814 | ZNF671
Description
zinc finger protein 671 [Source:HGNC Symbol;Acc:26279]
Coordinates
chr19:58231119-58233806:-
Coord C1 exon
chr19:58233684-58233806
Coord A exon
chr19:58233066-58233683
Coord C2 exon
chr19:58231119-58233065
Length
618 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AGCATTTGTGTGTTCTTCAGGTT
3' ss Score
9.09
Exon sequences
Seq C1 exon
GAATTGCATTTTCCAGATCACGTGCAGTCATGAAACTAGAGCGAGGAGAAGAGCCCTGGGTGTATGACCAGGTGGATATGACTTCAGCCACAGAAAGAGAGGCCCAGAGGGGACTTAGACCTG
Seq A exon
GTGAGTGGACATCGGGGAAGGGCACGATGTCAAAGCTGGGTTCAAAACTGGCAACATTAACTGTTCACATCAGTGTTTGTTTCCAGGGCCAGTGGCCACACAGCGTTTCTATCTGTCCTTTCCTGTTCTTGACACGAAGATATATCATTTCTAGTTTGTTAGCCCCTTGCCACCCTCACCTCTGGCCTTCACCTTACACCCATGTTTCACCACTTCTCTGTCTACATTTTTTGGCAGTATTGACCTGCAATTAATGTTCACAAGATGTGCATATATTCTTAAATAGTCTTTGAACACCAGCTGCTCACTTGTAGTTGGATTTTCCTGGGACTGGATACATTTTTCATAGCACTCACGAGTCACTAACAGTCAAGGCCCTACTGGAAGCCATTTGTTTGGTTCCATTCTTATATCCTGGCCCTTCATTGGCACTCCCCCATGGTATGACCTCCAGAGGCTCACTACCTCAAAGCCATTCCTTCCTCACTCTGACCATGCCTCTCATTCTGAAAACAGTTTCATGAACTTATTCCTGCATGTGTCAAATGCACATATACAATGAGGTTGCCCCTTCCCACCCGTAAATATGCATTTAATCAGCATTTGTGTGTTCTTCAG
Seq C2 exon
GTTGTTGGCATGGAGTGGAGGATGAAGAGGTATCTTCTGAGCAGAGCATTTTTGTAGCAGGAGTGTCAGAGGTCAGGACTCTCATGGCAGAGCTGGAGTCTCACCCATGTGACATATGTGGCCCAATATTGAAAGATACCTTACACCTGGCTAAATACCATGGGGGAAAAGCCAGGCAGAAACCATACTTGTGTGGGGCATGTGGAAAGCAATTCTGGTTCAGTACAGACTTTGACCAGCACCAGAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGTGAAAAGCTGCAGAGTCCATGTGCCAGAGAAGACCCTCACATGTGGGAAAGGTAGGAGAGACTTTTCAGCCACATCTGGCCTTCTTCAGCATCAGGCCTCTCTCAGCAGCATGAAGCCCCACAAGAGCACTAAGCTTGTGAGTGGCTTTCTCATGGGACAGAGGTATCACAGGTGTGGTGAATGTGGGAAAGCCTTCACCCGCAAAGACACACTTGCTCGGCATCAGAGAATCCACACTGGAGAAAGGCCTTATGAGTGTAACGAATGTGGGAAATTCTTCAGCCAAAGCTATGACCTCTTTAAACACCAGACAGTTCACACTGGAGAAAGGCCATACGAGTGCAGCGAATGTGGGAAATTCTTTAGACAAATCTCCGGCCTGATTGAGCACAGGCGAGTTCACACGGGTGAAAGACTCTATCAGTGTGGCAAATGTGGGAAATTTTTTAGCAGTAAGTCTAATCTCATTCGACACCAGGAAGTTCACACAGGAGCCAGGCCTTATGTATGCAGCGAATGTGGGAAAGAGTTCAGTCGGAAACACACACTTGTTCTGCACCAACGAACTCACACTGGAGAAAGGCCTTATGAGTGCAGTGAATGTGGGAAGGCCTTTAGCCAAAGCTCCCACCTTAATGTACACTGGAGAATTCACAGCAGTGATTATGAGTGTAGCAGATGTGGTAAAGCTTTCAGCTGCATCTCCAAACTCATTCAGCACCAGAAAGTTCACTCTGGAGAAAAGCCTTATGAGTGCAGCAAGTGCGGGAAAGCCTTCACTCAAAGACCCAACCTCATCAGGCACTGGAAAGTCCACACTGGGGAAAGGCCTTATGTGTGTAGTGAGTGCGGGAGAGAATTCATCCGGAAACAGACACTTGTTCTGCACCAGAGGGTTCATGCTGGAGAAAAGCTTTAAGAGTGTAGCAAATGTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAGCAGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCATCAGTAAGAAGTGAAACTTCATAGATATGGACATTCCCACTGGGGAGATTCCCTGTGAGTGTCAAGTATGTGAGATGCTTTCAGCAGCTGTGTTGCACTTTTTAAATGGCTATTGGCCTTTGCTGGGGCAGGAGCCATCTGCTCCTACCATCTGGCAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCTCTCTTCTCTCCCCAGTCCCTAAAAGGTGTTGTGAGTGGTCTCACAGCCCACTAGGGGTCTTAATTTCCTCTCTTTTGATGTAAATGGCATGGAAATAATCAGCTTTGTTCAAGAGGACACAGAAGGATTCTGCAAATAGCCTGCAGAGACTTACCTGTGTTGATTGATTTCATATGATGCTCGTTATGGATATATCCAATATCCAAGTCACCCAGCTCTGGAACTGCCTGCTTCACATTGCTCATGATAATAAAGGCCTGTTCTTTAAGCCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083814-ZNF671:NM_024833:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGAGCCCTGGGTGTAT
R:
AAGTTTCCCTCCATTGGGCTG
Band lengths:
348-966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)