HsaINT0188126 @ hg19
Intron Retention
Gene
ENSG00000229809 | ZNF688
Description
zinc finger protein 688 [Source:HGNC Symbol;Acc:30489]
Coordinates
chr16:30582331-30583728:-
Coord C1 exon
chr16:30582755-30583728
Coord A exon
chr16:30582445-30582754
Coord C2 exon
chr16:30582331-30582444
Length
310 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
TGATCCCTGTTCTCTCCCAGGAT
3' ss Score
9.33
Exon sequences
Seq C1 exon
TTCTACCGCGGGTGTACACATGGTTTGCCAGGGTGTGCGCGTCTTCCCAAGGGGTCTGGGGACCAAATTCCAGCTCCCGCCATCGGGAGGCACGGTAAGAGACCGTAGGGGACACAATCCCGAGCACCGCAGATGCCGAGGTCTCCGCTGCGCTCCAGTCTGTCAACAGAGGCTTCAGGACCGCGGGGTCCCTTCAAATGCCCCGCCAGTCCCAGGCCAATCACCGCGCAGCTTCTTCCGGGATCGTCGCCAATCATCGGCCGTTGCGTATTGCGGGTACAGAGGGGTAAGTGAAGCTTCGGGCCCTTACATCTTTCTTGAAGGCAAGAAGCCTCTCCTCTACTTCCCAGACACCCCGCCTCCCCCACTAGAAAAAGCAGCCGAAGCGGCTTTATTTAAGGGCAAGTGGGACGATGAGGCCAGAGAAGTCAGAAAGGCTCCATATTTGATATGGTCAAATAATGGCGCCCTTAAGAGCAGCCTGTGACAATTGAAGGGTGGTCGCCATATTTTCAGAAGGCACCTTCCGGGTCCCTTAACCCGGGTGTCTATGTCCAAGCGGCCATGAAGTGAATAAACACTGAGGAATTATATTTGTCCCTATCAGAATCCTCGAATCCCTAGCAGCCAGTCCCTGCTACTTCGGTTGCCTCGGCTGCGTTCGGACGCCACGGCTGGGCGGGGCCGCCCTTCCTGTGGACAACGACAGCTGAGGCCGGGAGCGGGGAGGCGGCGGCTCCAGGGACCTGGCGGCCGCCGATCGGGGCTGCGAGGCCCCATGGCGCCGCCCCCAGCCCCGCTCCTGGCGCCGAGGCCCGGGGAGACCCGGCCTGGTTGCAGGAAGCCCGGGACTGTGAGCTTCGCGGACGTGGCCGTGTACTTCTCCCCGGAGGAGTGGGGCTGTCTGCGGCCCGCGCAGAGGGCTCTGTACCGGGACGTGATGCAGGAGACCTACGGCCACCTGGGCGCGCTCG
Seq A exon
GTGAGAGCCCCGGGTCCGAGCCCCCTCCTCCTTCACCGGGTTCACAGGGGAGATGATGTAGAAGGGCCGAGAGGACTGTGAGCCCTAATCCCGCACTCTTGCACCAACACCAGCAGCCACCTCCCGTTCCCAGGGCTTCAGGTACCCCCTCGGGAGTGTTTTCACCCGCATCCATTTCATTCAGGCAGCAGCACTGCAGCCCCTTCCAGGTTGAGTATAAGCTCCGAGGGGGTGCCCTCAGCCTGGAGGGGAATGCCATCTTCCCACGATGGCCTCTCAGGCCCGCGCTGTGATCCCTGTTCTCTCCCAG
Seq C2 exon
GATTCCCAGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGAGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGAAGGGGGAAAGACTGGGAGGAGCTCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229809-ZNF688:NM_145271:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.527 A=NA C2=0.926
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=62.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGACAACGACAGCTGAG
R:
CTCCAAGCCTCACTCTCCTGT
Band lengths:
342-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)