BtaINT0165977 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019357 | ZNF688
Description
zinc finger protein 688 [Source:HGNC Symbol;Acc:HGNC:30489]
Coordinates
chr25:26993387-26996169:-
Coord C1 exon
chr25:26995763-26996169
Coord A exon
chr25:26994117-26995762
Coord C2 exon
chr25:26993387-26994116
Length
1646 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
ACTTGATTCCTGTTTCCTAGGAG
3' ss Score
7.4
Exon sequences
Seq C1 exon
GTCCAAGCTGCCATGAAGTGAATAAACACCGAGGCGGTCTATTTGTCCCCATCAGAATCCCGAATCCCAGCCCTGCTACTTCGGTTCCCTTGGCTGCATACGGAAGCCGAGGCTGGGCGGGGCCTCGGGCTCAGGAGCCCTTCTTGTGGACGACGAGAGCTGAGGCCGGGCGCGGGGACCAGGCGGCCGCTGCTCGGGGCTGGGAGGCCCCATGGCGCCGCCCCCGGCCCCGCTCCTGGTGCTGAGACCGGGGGAGACCGGGCCTGGTTGCAAGAAGCCCTTGGCCGTGAGGTTCGCGGATGTGGCCGTGTACTTCTCCCCGGAGGAGTGGGGGTGTCTGCGGCCCGCGCAGAGAGCCCTGTACCGGGACGTGATGCAGGAGACCTACGGCCACCTGGGCGCGCTCG
Seq A exon
GTGAGGCCCCGGGTCAGAGCCCCGCTCCTGCTTCACTGGGGTTCACAGGGGAGATCAAATAAGGACCCGGAGGATTGTAAGCCTTAATCCCGCCCTATCCCACCAACAGCACCAGCCACCTCCCATCCGTAACGCTTCAGGTACCCCCTCGGGAGTCCTTCCATCCCACATCCGCTTCCTTCTGGAAGGCGCACTGCAGACCCAGTCCAGATTGAGCCTAAACTTTGAGGAGATGCTCTCACCCTGACGTGGGGGGCGCCGTCTTCCCAGGGCAGCCTCTCAAGCCAGCACCGTGATCCCTGTTCTCTCCCAGGATTCCCAGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGAGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGGAGGGGGAAAGCCTGGGAGGAGCTCTGAGAGGTGAGGGATGGTCCCAGGTCTTCCCTGCCTGGCGTTCCAGAGCTTCCTGTATAGCAGTGTTTCCTTTCAGATCCCCACCTCCGGCACCCCTAAAGGAATGAAAGAGCCAACCGATGTTGGATTCTAGCTAAGGAAAAAAGGCAGACCTGATACTAAGTTTTCAGAACTTGAGACAACTTGAGACCAGAATAAGAATCAGGAGCCCAGACTCCCTCTCCTCTCTCTGCTCATTCTCTCATTTTCAGGAACAACTAAAACTCCCTAAGAGGTAAAGCGGAGAAGGCGATGGCACCCCACTCCAGTACCCTTGCCTGAAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGCAGACCATGGGGTCGCTAAGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACTTCGGGGCCTGGTGGGCTGGCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGTGACTTAGCAGTAGCAAGAGGTAAAGAACTTGCCTGCCAATGCAGAAGACACAAGAGACAGGGGTTGGATCCCTGAGTGGGGAAGATCCCCTAGAGGAGGAAAATGGTCACCCACTCCAGCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCGTGGGGTCTCAGAGTTGGACACAACCAAAGCAACTTAGCATACAAGAATGAAAGCAGCTTCAGGTCTGCCTTTTACATTCCTCAAGCAAAGCAAAGTGGTACAAGAGAAAATACCCAGTAATTGACAGCTTGGTTCTTCACTCCCCACTGGCCCTCACCAGAATGCTCCTCAGCAAATGTCTTTTCTCCTCTGTAAATGCCTTAACCCTAGCAAAAAAGTTGAGAAACCATAAAAATAATAGCTATTGCTAATTAAGCATTTACTAAGTGATGCTTCTACTCATGTAATCCTCCCAACAACCCTGTGAAGTAAAGAAAGCATTATGATTCCCATTTGACACATGAGGAACCAAGGCCGACCTAAGAGATTTGAACCCTGCTTATGGTTTTTCAAAGCCTGTGTGTTATTCAGTGGGCAGTACCTTTCTGGCACTTCTCTGAGGAAAAGCATCCTATAACCTGAGACAATATAAGCAAATGTGTTTTAAAAAGGAACTTGATTCCTGTTTCCTAG
Seq C2 exon
GAGCTACCCCCAACAAAAAGGAAGAGGAACCCGAAGCAGGACTAGGAGCCAAATCACCGAGAAAGGCTCCTGGGAAGGAGAGGCCTGAGGAGCTGGTTAAACACAACCCTGGCACGACCGTCAGCAAAACCTCGGCCAGAGCACAGGCACCCAGACAAGCTGTCTGGGACCAGGGTGCAGGTGCTCAGTCCCCGGCCCCTGTACCCAGCGCGGATGCTCAGGCCAGCCAGCGGCGCCACGTGTGTGCAGACTGCGGTCGGCGCTTCACCTACCCCTCGCTGCTGGTCAGCCACCGACGCATGCACTCGGGTGAGCGGCCGTTCCCCTGCCCCGAGTGTGGCATGCGCTTCAAGAGGAAGTTCGCTGTGGAAGCTCACCAGTGGATCCACCGCTCCTGCTCTGGGGGGCGGCGGGGCCGGAGGCCCGGGATCCGGGCTGTGCCTCGGGCCCCGGTCCGAGGTGACCGGGACCCTCCGGTGCTATTCCGGCACTACCCGGACATCTTTGAGGAGTGCGGGTGAGCGGCTTCTGCTGGCAGGGTTTGAGCCTGACCTCAGCGCTGAGGACTCACTGGGTCCCAAGGGAGGCTCCTGAGTCAGGGCTTTGGGACCCACAGTTCATCCCTTGGGCTTTCCTCAAGGATCCCTCAAGTTTCCAAGCTTGTAAAAAGAGAAGTGCCTGTAAAGATTCAAATAGATTAAACTCGACACCCCCTCTCTCCCCATCTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019357:ENSBTAT00000024083:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=NA C2=0.662
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=62.1)
A:
NA
C2:
PF050538=Menin=PD(76.1=58.6),PF134651=zf-H2C2_2=WD(100=14.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTTGTGGACGACGAGAGC
R:
TCCTTCCCAGGAGCCTTTCTC
Band lengths:
347-1993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]