MmuINT0179714 @ mm9
Intron Retention
Gene
ENSMUSG00000045251 | Zfp688
Description
zinc finger protein 688 [Source:MGI Symbol;Acc:MGI:1916484]
Coordinates
chr7:134562480-134565032:-
Coord C1 exon
chr7:134564919-134565032
Coord A exon
chr7:134563156-134564918
Coord C2 exon
chr7:134562480-134563155
Length
1763 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AATTAATTTCTGTTTCCCAGGAG
3' ss Score
7.28
Exon sequences
Seq C1 exon
GGTTCCCGGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGGGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGGAGGGGGAAAGCCTGGGAGGAGCTCCGAGAG
Seq A exon
GTGAGGGATTGTCCCAAGTCCTCCTGAAACCTTGTTTGTCCGGGGGTTTCTTCTCTAGTAAACCTTTCTTTCAGATTCCCCATTCCAGCATCCCTACAGATTAGAGCCTACATGTTCAGATACTAAAGAAAAGAAAGCCTATCTACTCCAGAGTTTTGGAAATTCAGGAGAGCTGTCCTATTAAAAACAGTAGGGGGGCTGGAGAGATGGCCCATGAGTCAAGAGCACCTACTGTTCTTCCTAAGTACCAGCGTTCAATTCCCAGCACCCACACGGCAGCTTACAGCTGTCTGTAACTCCAGTTCCAGGGGACCTGACACCCTCACACAGAACCAAATGTAGGCAAAACACCAATGTATATAAAAACAAATAAATACATCTTAAAAAAAAAAACAGAGTAGGAGAATCTAGAACTCAAAGAATGTTTATGTTTCCAGATGTTTGTTAAAATAACACTCATTTCCCCTTTTTAAAACTAACTAAGGCTGGTCATTGTGGCACACACCTTTAATCTCAGTACCCCGGGGGGACAGAGGCAGGGGGATTTGAGGCCAATTGAGACAACATACTGTGAGACCTTGTCTCAGCTCACCACCCCTACCCTCCAAAAATCCCTAAAATGCCCCTAAAAATAGAACTTGTCTGCCTATCATAGTTCTTGAACAAGGCAAAGTGGTACACAAGAAAAGTGTCTGCCTGGATAATGACAGCTTGGCTCGTCTCCCATCTCTACCCTGAGTGGAAGAACCCTGAAGCAAATATGGTGCCTCATCTATCAAAGAACCGCTGCACCAAAACCAACTACAAAATACACCAGTAAATACTGTTTATTGAGCATTTACTAAGTGACCAATAAGCATGTATGTATTTAATCCAACAATCCTGGAAGTCAGGGGACCGTTACTTTTTCCCATTTGACACAGGAGGAAGGGGATTTTAACTGACTTTCAACAACTCCGTGTTAGCCACCGGGCTATGCTTTGGTGCTGCCTGGGTAACAGCTAGAGTGGTCAGTGCAGACGTGTTAGGTTTTACTGAAACTTTTTTCCTAAGATTTATCTTTATTATTTTTCATTCTGTGTCAGTGTATGGGTCTCCATAAGTGCAGCTGCCCAGGGAGACCGGAGTCATGAGCGTCCCTGATGCTGAAGTTACAGTGGTTGTAAGCTGCCCCATGTGGGTTTGGGGAAGTAAACTCAGGCCCTGTGGAAGGACAGCAAGTGCTCCTAACCACTGAGCCATCCCAGCCCCGGGTTTGTTTTATTTTTGTTGTGTTGATTGTTTTCATTTTTAAGACAGGTAGCTCTGGCTGGCCTGGAACTCAGCATTTAGACCGGGTTGTCTCCAAACCCACAGAAACCTACCTGCCTTTCCTCTGAAGTGCTAGGGTTAAAGGTGAGCAACGATCACACCCTACTATCCTGTTTTTGAGACAGGATCTCACTATGTAGGCCATGCTGGCCTCAAACTTATGGCTATCTTCCAGCCTCACCTTTTCCAAATGCAGGGATTACAGCTACTTCCCTGGCGGGACAAATGGGGCTTTTTAATTTGGTTTGGTTTGGTTTGGTTTTTGTTTTTTTGAGATAGATTTCTCTACGTATTCTTGGCTGTTTTGGAATTTGCTCTGTAGACCAGGCTGGCTTTAGGACTCGCAGAGATCCTGCCTGCCTCTGCCCCTGAAGTGTTGGGATTAAAGGTATGAGCCACCACTGCCCAGTGACAAATGAGTTTTTAAAATGCAATTAATTTCTGTTTCCCAG
Seq C2 exon
GAGACATTCCAAATGAGACAGAGTGGGGCTGCAAGGAAGGAGGAGAGAGACCGGCAGAGGCTCCTGCTCAGTTGCAACCTAAAGAGGTGGTTGAACATAAGACTTATTCCATGGCTACCAAGTCCTCTGCAGGGGCACAGCCACCTACCAAAGCTGCCCCAGACCAGATAGCAGGTGTGCAGCTTCCTGTCCAGGTACCAAACACCGATATTCAGGCCAGCCAGCGACGTCATGTGTGTGTGGACTGTGGACGCCGGTTTACCTATCCATCTTTGCTGGTCAGCCACCGGCGCATGCACTCTGGTGAGCGACCCTTCCCCTGCCCAGAGTGTGGTGTACGCTTCAAGAGGAAGTTCGCAGTGAAAGCACACCAATGGATCCACCGTTCCTGCTCAGGGGGTCGCCGCGGCCGAAGGCCTGGGATCAGGGCTGTGCCTGGAGCCCCAGTCCGAGGTGACCGGGATCCACCAGTGCTCTTTCGGCACTATCCAGACATTTTTGAGGAGTGTGGGTGAGTTGAATGGCCGCCTCCGTCTGGAGGTCCGGAGCCTGGAGTTGAACATGAACTTGGCAACTGAGACAAATGAGTCAAGACTTCTTGAGGATCTCTTGTAAACTTGTAAAAAAAAATTTGCCTGTAAAGATTCATACAGATTAAACCTGACACCTCCCCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045251-Zfp688:NM_026999:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=NA C2=0.569
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=15.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGCCCTCATCTCTTGGA
R:
CAGTCCACACACACATGACGT
Band lengths:
346-2109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: