MmuEX0053552 @ mm9
Exon Skipping
Gene
ENSMUSG00000045251 | Zfp688
Description
zinc finger protein 688 [Source:MGI Symbol;Acc:MGI:1916484]
Coordinates
chr7:134562481-134565541:-
Coord C1 exon
chr7:134564919-134565541
Coord A exon
chr7:134563524-134563619
Coord C2 exon
chr7:134562481-134563155
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCATTTTTAAGACAGGTA
3' ss Score
2.93
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACTTCTCCCCGCAGGAGTGGGGGTGTCTGCGGCCCGCGCAGAGAACCCTGTATCGGGAGGTGATGCGCGAGACCTACGGCCTCCTGGGCGCGCTCGGTGAGGCCCCGAGTCAGAGCCCCGCCCCCATCCTCCTGGGGGTTCACCGGGGAGTTGCAGTAGACCGATCAAGTGGATTATGAGCCCTCATCCCGCACTTTTCCACCAGCAGCATCAGTCACCTTCCATTCTCAGGGCTTCCTCGGGAGTCTCCATTCAGGCAAGAGCATCGCAAACCCTGTCCAGGTTAATGTGTGCATAAGTTCCGAGGAGGTGCCCTCACCCTAGTGGGATGCTATCTGCCCCGGCCAGCCTCTCAGGCCAGCACTGTGACCCCTGTTCTCTCTCAGGGTTCCCGGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGGGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGGAGGGGGAAAGCCTGGGAGGAGCTCCGAGAG
Seq A exon
GTAGCTCTGGCTGGCCTGGAACTCAGCATTTAGACCGGGTTGTCTCCAAACCCACAGAAACCTACCTGCCTTTCCTCTGAAGTGCTAGGGTTAAAG
Seq C2 exon
GAGACATTCCAAATGAGACAGAGTGGGGCTGCAAGGAAGGAGGAGAGAGACCGGCAGAGGCTCCTGCTCAGTTGCAACCTAAAGAGGTGGTTGAACATAAGACTTATTCCATGGCTACCAAGTCCTCTGCAGGGGCACAGCCACCTACCAAAGCTGCCCCAGACCAGATAGCAGGTGTGCAGCTTCCTGTCCAGGTACCAAACACCGATATTCAGGCCAGCCAGCGACGTCATGTGTGTGTGGACTGTGGACGCCGGTTTACCTATCCATCTTTGCTGGTCAGCCACCGGCGCATGCACTCTGGTGAGCGACCCTTCCCCTGCCCAGAGTGTGGTGTACGCTTCAAGAGGAAGTTCGCAGTGAAAGCACACCAATGGATCCACCGTTCCTGCTCAGGGGGTCGCCGCGGCCGAAGGCCTGGGATCAGGGCTGTGCCTGGAGCCCCAGTCCGAGGTGACCGGGATCCACCAGTGCTCTTTCGGCACTATCCAGACATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045251_MULTIEX1-2/2=1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=0.577 C2=0.557
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=15.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCTGAGGAGGGGGAAAG
R:
TGCAGAGGACTTGGTAGCCAT
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: