MmuEX0053552 @ mm10
Exon Skipping
Gene
ENSMUSG00000045251 | Zfp688
Description
zinc finger protein 688 [Source:MGI Symbol;Acc:MGI:1916484]
Coordinates
chr7:127418967-127420749:-
Coord C1 exon
chr7:127420589-127420749
Coord A exon
chr7:127420010-127420048
Coord C2 exon
chr7:127418967-127419641
Length
39 bp
Sequences
Splice sites
3' ss Seq
GGTTGTCTCCAAACCCACAGAAA
3' ss Score
5.62
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTCTTGAACAAGGCAAAGTGGTACACAAGAAAAGTGTCTGCCTGGATAATGACAGCTTGGCTCGTCTCCCATCTCTACCCTGAGTGGAAGAACCCTGAAGCAAATATGGTGCCTCATCTATCAAAGAACCGCTGCACCAAAACCAACTACAAAATACACCA
Seq A exon
AAACCTACCTGCCTTTCCTCTGAAGTGCTAGGGTTAAAG
Seq C2 exon
GAGACATTCCAAATGAGACAGAGTGGGGCTGCAAGGAAGGAGGAGAGAGACCGGCAGAGGCTCCTGCTCAGTTGCAACCTAAAGAGGTGGTTGAACATAAGACTTATTCCATGGCTACCAAGTCCTCTGCAGGGGCACAGCCACCTACCAAAGCTGCCCCAGACCAGATAGCAGGTGTGCAGCTTCCTGTCCAGGTACCAAACACCGATATTCAGGCCAGCCAGCGACGTCATGTGTGTGTGGACTGTGGACGCCGGTTTACCTATCCATCTTTGCTGGTCAGCCACCGGCGCATGCACTCTGGTGAGCGACCCTTCCCCTGCCCAGAGTGTGGTGTACGCTTCAAGAGGAAGTTCGCAGTGAAAGCACACCAATGGATCCACCGTTCCTGCTCAGGGGGTCGCCGCGGCCGAAGGCCTGGGATCAGGGCTGTGCCTGGAGCCCCAGTCCGAGGTGACCGGGATCCACCAGTGCTCTTTCGGCACTATCCAGACATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045251-'4-6,'4-5,5-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.564
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=15.1)
Main Inclusion Isoform:
ENSMUST00000106300fB4701
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAGTGGAAGAACCCTGA
R:
GCCCCACTCTGTCTCATTTGG
Band lengths:
113-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types