MmuEX0053551 @ mm10
Exon Skipping
Gene
ENSMUSG00000045251 | Zfp688
Description
zinc finger protein 688 [Source:MGI Symbol;Acc:MGI:1916484]
Coordinates
chr7:127418967-127422034:-
Coord C1 exon
chr7:127421809-127422034
Coord A exon
chr7:127421405-127421518
Coord C2 exon
chr7:127418967-127419641
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGACCCCTGTTCTCTCTCAGGGT
3' ss Score
10.84
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AGCCAAGCCGCTGCCTGGGCAGGATCCCCGATGGCGCCACCCCCGGCCTCACTGCTGGTTCCGATGCCTGGGGAGATCTGGCCCGGTTTCAGGAAGCCTGAGCTTGTGAGCTTCGCGGACGTGGCCGTGTACTTCTCCCCGCAGGAGTGGGGGTGTCTGCGGCCCGCGCAGAGAACCCTGTATCGGGAGGTGATGCGCGAGACCTACGGCCTCCTGGGCGCGCTCG
Seq A exon
GGTTCCCGGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGGGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGGAGGGGGAAAGCCTGGGAGGAGCTCCGAGAG
Seq C2 exon
GAGACATTCCAAATGAGACAGAGTGGGGCTGCAAGGAAGGAGGAGAGAGACCGGCAGAGGCTCCTGCTCAGTTGCAACCTAAAGAGGTGGTTGAACATAAGACTTATTCCATGGCTACCAAGTCCTCTGCAGGGGCACAGCCACCTACCAAAGCTGCCCCAGACCAGATAGCAGGTGTGCAGCTTCCTGTCCAGGTACCAAACACCGATATTCAGGCCAGCCAGCGACGTCATGTGTGTGTGGACTGTGGACGCCGGTTTACCTATCCATCTTTGCTGGTCAGCCACCGGCGCATGCACTCTGGTGAGCGACCCTTCCCCTGCCCAGAGTGTGGTGTACGCTTCAAGAGGAAGTTCGCAGTGAAAGCACACCAATGGATCCACCGTTCCTGCTCAGGGGGTCGCCGCGGCCGAAGGCCTGGGATCAGGGCTGTGCCTGGAGCCCCAGTCCGAGGTGACCGGGATCCACCAGTGCTCTTTCGGCACTATCCAGACATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045251-'0-6,'0-0,3-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.564 C2=0.564
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=62.1)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=15.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCCTGTATCGGGAGGTG
R:
GGAAGCTGCACACCTGCTATC
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types