GgaEX6018013 @ galGal4
Exon Skipping
Gene
ENSGALG00000019713 | KRBOX4
Description
KRAB box domain containing 4 [Source:HGNC Symbol;Acc:HGNC:26007]
Coordinates
chr2:468148-469814:+
Coord C1 exon
chr2:468148-468274
Coord A exon
chr2:469012-469122
Coord C2 exon
chr2:469713-469814
Length
111 bp
Sequences
Splice sites
3' ss Seq
CGCTTATCTTTGCTTCACAGGAT
3' ss Score
9.57
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
GAGCCTGTGACCTTTGAGGACATCGCCATCTATCTGAGCCGCGCAGAGTGGGACATGGTTGCAGAGGAGCAGAGGGAGCTGTACCGCAGCGTCATGCTGGACAACTATGAGCTCTTGGCATCACTGG
Seq A exon
GATACCCAGGCCCCAAACCTGACATTCTGCATCGGCTGGAGCGTGGGGAAGAGCCATGGGTCAACACACCACAGAGCACAGTGAAGTGGGATGGACCTGACAGACCTCTTG
Seq C2 exon
GACTCAATGGGTACAAGAGATGGCTGGCAGAGTCGTGCTCCAGCAGGTGGCTGGATGCTGACAAGCACAAGGTGCTGGAGGAGACAAACCCCCCCAGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019713-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.526 C2=0.343
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTGTGACCTTTGAGGAC
R:
GGGTTTGTCTCCTCCAGCAC
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]