HsaEX0074195 @ hg38
Exon Skipping
Gene
ENSG00000229809 | ZNF688
Description
zinc finger protein 688 [Source:HGNC Symbol;Acc:HGNC:30489]
Coordinates
chr16:30569346-30572734:-
Coord C1 exon
chr16:30571434-30572734
Coord A exon
chr16:30571010-30571123
Coord C2 exon
chr16:30569346-30570436
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGATCCCTGTTCTCTCCCAGGAT
3' ss Score
9.33
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GAGCAGCCTGTGACAATTGAAGGGTGGTCGCCATATTTTCAGAAGGCACCTTCCGGGTCCCTTAACCCGGGTGTCTATGTCCAAGCGGCCATGAAGTGAATAAACACTGAGGAATTATATTTGTCCCTATCAGAATCCTCGAATCCCTAGCAGCCAGTCCCTGCTACTTCGGTTGCCTCGGCTGCGTTCGGACGCCACGGCTGGGCGGGGCCGCCCTTCCTGTGGACAACGACAGCTGAGGCCGGGAGCGGGGAGGCGGCGGCTCCAGGGACCTGGCGGCCGCCGATCGGGGCTGCGAGGCCCCATGGCGCCGCCCCCAGCCCCGCTCCTGGCGCCGAGGCCCGGGGAGACCCGGCCTGGTTGCAGGAAGCCCGGGACTGTGAGCTTCGCGGACGTGGCCGTGTACTTCTCCCCGGAGGAGTGGGGCTGTCTGCGGCCCGCGCAGAGGGCTCTGTACCGGGACGTGATGCAGGAGACCTACGGCCACCTGGGCGCGCTCG
Seq A exon
GATTCCCAGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGAGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGAAGGGGGAAAGACTGGGAGGAGCTCGGAGAG
Seq C2 exon
GAGATGTCCCAAACAGGAAGGAAGAGGAACCGGAGGAAGTCCCAAGAGCCAAAGGGCCTAGAAAGGCTCCTGTGAAGGAGAGTCCTGAAGTGCTGGTGGAACGCAACCCTGACCCAGCTATTAGCGTGGCCCCGGCACGGGCACAGCCACCCAAAAATGCTGCCTGGGACCCGACCACAGGAGCACAGCCCCCGGCACCCATACCCAGCATGGATGCTCAGGCCGGCCAGCGGCGCCACGTGTGCACGGACTGCGGCCGCCGCTTCACCTACCCCTCACTGCTGGTCAGCCACAGGCGCATGCACTCGGGGGAGCGGCCTTTCCCCTGCCCCGAGTGTGGCATGCGCTTCAAGAGGAAGTTCGCAGTGGAAGCGCACCAGTGGATCCACCGCTCCTGCTCCGGGGGGCGGCGGGGCCGGAGGCCTGGGATCCGGGCTGTGCCTCGGGCCCCCGTCCGAGGTGACCGGGACCCGCCTGTGCTCTTCCGGCACTACCCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229809-'2-12,'2-9,7-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.484 A=0.897 C2=0.707
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=62.1)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=14.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGTGATGCAGGAGACCTA
R:
CATCCATGCTGGGTATGGGTG
Band lengths:
257-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development