HsaINT1047635 @ hg38
Intron Retention
Gene
ENSG00000229809 | ZNF688
Description
zinc finger protein 688 [Source:HGNC Symbol;Acc:HGNC:30489]
Coordinates
chr16:30571010-30572734:-
Coord C1 exon
chr16:30571434-30572734
Coord A exon
chr16:30571124-30571433
Coord C2 exon
chr16:30571010-30571123
Length
310 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
TGATCCCTGTTCTCTCCCAGGAT
3' ss Score
9.33
Exon sequences
Seq C1 exon
GCCAAGCATTGGGTGTGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGTGAGAAGATCGCTTCAGCCCGGGAGGTCGAGTCTGCAGTGAGCTAGGATCGCACTGCTGGGCCACAGAGCAAGACCCTGTCTCAAAACAAACAAAAAATAAATTCATGTATGTTAGCAACAATTACTATTTAATTTAAAACTTCCCCATTCCGATTCCATCCTCACCAAGCACGTTCCTTCGCCTGCAGCTTCGGTCTAGAGCCTGAGCGAGCCGAGCTGCGGATGCCAGGGGCTGGGTGGACTCCGCAGCTAAGCTACTGTAAAACACGCACCTGCTTCTACCGCGGGTGTACACATGGTTTGCCAGGGTGTGCGCGTCTTCCCAAGGGGTCTGGGGACCAAATTCCAGCTCCCGCCATCGGGAGGCACGGTAAGAGACCGTAGGGGACACAATCCCGAGCACCGCAGATGCCGAGGTCTCCGCTGCGCTCCAGTCTGTCAACAGAGGCTTCAGGACCGCGGGGTCCCTTCAAATGCCCCGCCAGTCCCAGGCCAATCACCGCGCAGCTTCTTCCGGGATCGTCGCCAATCATCGGCCGTTGCGTATTGCGGGTACAGAGGGGTAAGTGAAGCTTCGGGCCCTTACATCTTTCTTGAAGGCAAGAAGCCTCTCCTCTACTTCCCAGACACCCCGCCTCCCCCACTAGAAAAAGCAGCCGAAGCGGCTTTATTTAAGGGCAAGTGGGACGATGAGGCCAGAGAAGTCAGAAAGGCTCCATATTTGATATGGTCAAATAATGGCGCCCTTAAGAGCAGCCTGTGACAATTGAAGGGTGGTCGCCATATTTTCAGAAGGCACCTTCCGGGTCCCTTAACCCGGGTGTCTATGTCCAAGCGGCCATGAAGTGAATAAACACTGAGGAATTATATTTGTCCCTATCAGAATCCTCGAATCCCTAGCAGCCAGTCCCTGCTACTTCGGTTGCCTCGGCTGCGTTCGGACGCCACGGCTGGGCGGGGCCGCCCTTCCTGTGGACAACGACAGCTGAGGCCGGGAGCGGGGAGGCGGCGGCTCCAGGGACCTGGCGGCCGCCGATCGGGGCTGCGAGGCCCCATGGCGCCGCCCCCAGCCCCGCTCCTGGCGCCGAGGCCCGGGGAGACCCGGCCTGGTTGCAGGAAGCCCGGGACTGTGAGCTTCGCGGACGTGGCCGTGTACTTCTCCCCGGAGGAGTGGGGCTGTCTGCGGCCCGCGCAGAGGGCTCTGTACCGGGACGTGATGCAGGAGACCTACGGCCACCTGGGCGCGCTCG
Seq A exon
GTGAGAGCCCCGGGTCCGAGCCCCCTCCTCCTTCACCGGGTTCACAGGGGAGATGATGTAGAAGGGCCGAGAGGACTGTGAGCCCTAATCCCGCACTCTTGCACCAACACCAGCAGCCACCTCCCGTTCCCAGGGCTTCAGGTACCCCCTCGGGAGTGTTTTCACCCGCATCCATTTCATTCAGGCAGCAGCACTGCAGCCCCTTCCAGGTTGAGTATAAGCTCCGAGGGGGTGCCCTCAGCCTGGAGGGGAATGCCATCTTCCCACGATGGCCTCTCAGGCCCGCGCTGTGATCCCTGTTCTCTCCCAG
Seq C2 exon
GATTCCCAGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGAGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGAAGGGGGAAAGACTGGGAGGAGCTCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229809:ENST00000223459:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=NA C2=0.897
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=62.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGACAACGACAGCTGAG
R:
CTCCAAGCCTCACTCTCCTGT
Band lengths:
342-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains