RnoINT0168584 @ rn6
Intron Retention
Gene
ENSRNOG00000018379 | Zfp688
Description
zinc finger protein 688 [Source:RGD Symbol;Acc:1310765]
Coordinates
chr1:198868407-198869009:-
Coord C1 exon
chr1:198868814-198869009
Coord A exon
chr1:198868521-198868813
Coord C2 exon
chr1:198868407-198868520
Length
293 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
TGACCCCTGTTCTCTCTCAGGGT
3' ss Score
10.84
Exon sequences
Seq C1 exon
ATGTCGCCACCCCCAGCCCCACTACTGGTTCCGATGCCTGGGGAGATCTGGCCTGGTTTCAGGAAGCCTGAGCTTGTGAGCTTCGCGGACGTAGCCGTGTATTTCTCCCCGCAGGAGTGGGGGTGTCTGCGGCCCGCGCAGAGAGCCCTGTACCGGGAGGTGATGCGCGAGACCTACGGCCTCCTGGGCGCGCTCG
Seq A exon
GTGAGGCCCCGGGTCAGAGCCCCGCCCCCCCCATCCTCCTGGGGGTTCACCGGGGAGATGCTGTAGACCGATCAAGTGGATTGTGAGCCCTCATCCCGCACTTTTCCACCAGCAGCATCAGTCACCTTCCATTCTCAGGGCTTTCTCGGGAGTCTCCATTCAGGCAAGAGCATCGCAAACCCTGCCCAGGTTAATTTGAGCATAAGTTCCGAGGAGGTGCCCTCACCCTAGTGGGATGCTATCTGCCCCGGCCAGCCTCTCAGGCCAGCACTGTGACCCCTGTTCTCTCTCAG
Seq C2 exon
GGTTCCCGGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGAGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGGAGGGGGAAAGCCTGGGAGGAGCTCCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018379:ENSRNOT00000024858:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.833
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=62.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCCCACTACTGGTTCC
R:
GAGCTCCTCCCAGGCTTTCC
Band lengths:
292-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]