RnoEX0101648 @ rn6
Exon Skipping
Gene
ENSRNOG00000018379 | Zfp688
Description
zinc finger protein 688 [Source:RGD Symbol;Acc:1310765]
Coordinates
chr1:198866137-198869009:-
Coord C1 exon
chr1:198868814-198869009
Coord A exon
chr1:198868407-198868520
Coord C2 exon
chr1:198866137-198866654
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGACCCCTGTTCTCTCTCAGGGT
3' ss Score
10.84
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATGTCGCCACCCCCAGCCCCACTACTGGTTCCGATGCCTGGGGAGATCTGGCCTGGTTTCAGGAAGCCTGAGCTTGTGAGCTTCGCGGACGTAGCCGTGTATTTCTCCCCGCAGGAGTGGGGGTGTCTGCGGCCCGCGCAGAGAGCCCTGTACCGGGAGGTGATGCGCGAGACCTACGGCCTCCTGGGCGCGCTCG
Seq A exon
GGTTCCCGGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGAGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGGAGGGGGAAAGCCTGGGAGGAGCTCCGAGAG
Seq C2 exon
GAGATACTCCAAATGAGGGAGCACGGGGCTGCAAGGAAGGAGGTGAGAGGCCGGCAGACATTCCTGCTCAGCTGCAACCTAAAGAGGTGGATAAACACAAGACTCATCCCATGGCTACCAAGGCCTCTGCAGGGGCGCGGCCACCTACCAAAGCTGCCCCAGACCAGATAGCAGCAGGCGTACAACCTCCTGCTCAGGTACCCAACACAGATATACAGCCCAGCCAGCGACGCCATGTGTGTGTGGACTGTGGACGCCGGTTTACCTACCCGTCTTTACTGATCAGCCACCGTCGCATGCACTCTGGTGAGCGACCCTTCCCCTGTCCAGAATGTGGTGTTCGCTTCAAGAGGAAGTTCGCAGTGAAAGCACATCAATGGATCCACCGTTCCTGCTCAGGGGGTCGCCGAGGCCGAAGGCCTGGGATCCGGGCTGTGCCTGGAGCCCCAGTCCGAGGAGACCGGGATCCACCAGTGCTCTTTCGGCACTATCCAGACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018379_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.833 C2=0.634
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=62.1)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=14.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTACTGGTTCCGATGCCTG
R:
TTGCAGCTGAGCAGGAATGTC
Band lengths:
254-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]