RnoALTD0034608-4/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018379 | Zfp688
Description
zinc finger protein 688 [Source:RGD Symbol;Acc:1310765]
Coordinates
chr1:198866137-198868914:-
Coord C1 exon
chr1:198868814-198868914
Coord A exon
chr1:198868625-198868813
Coord C2 exon
chr1:198866137-198866654
Length
189 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
3' ss Seq
AATCAATTTCTGTTTCCCAGGAG
3' ss Score
7.1
Exon sequences
Seq C1 exon
CGTGTATTTCTCCCCGCAGGAGTGGGGGTGTCTGCGGCCCGCGCAGAGAGCCCTGTACCGGGAGGTGATGCGCGAGACCTACGGCCTCCTGGGCGCGCTCG
Seq A exon
GTGAGGCCCCGGGTCAGAGCCCCGCCCCCCCCATCCTCCTGGGGGTTCACCGGGGAGATGCTGTAGACCGATCAAGTGGATTGTGAGCCCTCATCCCGCACTTTTCCACCAGCAGCATCAGTCACCTTCCATTCTCAGGGCTTTCTCGGGAGTCTCCATTCAGGCAAGAGCATCGCAAACCCTGCCCAG
Seq C2 exon
GAGATACTCCAAATGAGGGAGCACGGGGCTGCAAGGAAGGAGGTGAGAGGCCGGCAGACATTCCTGCTCAGCTGCAACCTAAAGAGGTGGATAAACACAAGACTCATCCCATGGCTACCAAGGCCTCTGCAGGGGCGCGGCCACCTACCAAAGCTGCCCCAGACCAGATAGCAGCAGGCGTACAACCTCCTGCTCAGGTACCCAACACAGATATACAGCCCAGCCAGCGACGCCATGTGTGTGTGGACTGTGGACGCCGGTTTACCTACCCGTCTTTACTGATCAGCCACCGTCGCATGCACTCTGGTGAGCGACCCTTCCCCTGTCCAGAATGTGGTGTTCGCTTCAAGAGGAAGTTCGCAGTGAAAGCACATCAATGGATCCACCGTTCCTGCTCAGGGGGTCGCCGAGGCCGAAGGCCTGGGATCCGGGCTGTGCCTGGAGCCCCAGTCCGAGGAGACCGGGATCCACCAGTGCTCTTTCGGCACTATCCAGACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018379-0-4,1-4,2-4,3-4-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.634
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=62.1)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=14.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCTACGGCCTCCTGG
R:
GCTGGCTGGGCTGTATATCTG
Band lengths:
256-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]