RnoEX0101647 @ rn6
Exon Skipping
Gene
ENSRNOG00000018379 | Zfp688
Description
zinc finger protein 688 [Source:RGD Symbol;Acc:1310765]
Coordinates
chr1:198866137-198869009:-
Coord C1 exon
chr1:198868814-198869009
Coord A exon
chr1:198868651-198868701
Coord C2 exon
chr1:198866137-198866654
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATCCCGCACTTTTCCACCAGCAG
3' ss Score
6.34
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
Exon sequences
Seq C1 exon
ATGTCGCCACCCCCAGCCCCACTACTGGTTCCGATGCCTGGGGAGATCTGGCCTGGTTTCAGGAAGCCTGAGCTTGTGAGCTTCGCGGACGTAGCCGTGTATTTCTCCCCGCAGGAGTGGGGGTGTCTGCGGCCCGCGCAGAGAGCCCTGTACCGGGAGGTGATGCGCGAGACCTACGGCCTCCTGGGCGCGCTCG
Seq A exon
CAGCATCAGTCACCTTCCATTCTCAGGGCTTTCTCGGGAGTCTCCATTCAG
Seq C2 exon
GAGATACTCCAAATGAGGGAGCACGGGGCTGCAAGGAAGGAGGTGAGAGGCCGGCAGACATTCCTGCTCAGCTGCAACCTAAAGAGGTGGATAAACACAAGACTCATCCCATGGCTACCAAGGCCTCTGCAGGGGCGCGGCCACCTACCAAAGCTGCCCCAGACCAGATAGCAGCAGGCGTACAACCTCCTGCTCAGGTACCCAACACAGATATACAGCCCAGCCAGCGACGCCATGTGTGTGTGGACTGTGGACGCCGGTTTACCTACCCGTCTTTACTGATCAGCCACCGTCGCATGCACTCTGGTGAGCGACCCTTCCCCTGTCCAGAATGTGGTGTTCGCTTCAAGAGGAAGTTCGCAGTGAAAGCACATCAATGGATCCACCGTTCCTGCTCAGGGGGTCGCCGAGGCCGAAGGCCTGGGATCCGGGCTGTGCCTGGAGCCCCAGTCCGAGGAGACCGGGATCCACCAGTGCTCTTTCGGCACTATCCAGACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018379_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.056 C2=0.634
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=62.1)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=14.5)
Main Inclusion Isoform:
ENSRNOT00000024858fB16998
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCCCTGTACCGGGAG
R:
TTTAGGTTGCAGCTGAGCAGG
Band lengths:
139-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]