MmuEX0053551 @ mm9
Exon Skipping
Gene
ENSMUSG00000045251 | Zfp688
Description
zinc finger protein 688 [Source:MGI Symbol;Acc:MGI:1916484]
Coordinates
chr7:134562481-134565582:-
Coord C1 exon
chr7:134565163-134565582
Coord A exon
chr7:134564919-134565032
Coord C2 exon
chr7:134562481-134563155
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGACCCCTGTTCTCTCTCAGGGT
3' ss Score
10.84
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCGGTTGCGGAGGCCGGAAGCGGAAGGCTAGGGCAGCCAAGCCGCTGCCTGGGCAGGATCCCCGATGGCGCCACCCCCGGCCTCACTGCTGGTTCCGATGCCTGGGGAGATCTGGCCCGGTTTCAGGAAGCCTGAGCTTGTGAGCTTCGCGGACGTGGCCGTGTACTTCTCCCCGCAGGAGTGGGGGTGTCTGCGGCCCGCGCAGAGAACCCTGTATCGGGAGGTGATGCGCGAGACCTACGGCCTCCTGGGCGCGCTCGGTGAGGCCCCGAGTCAGAGCCCCGCCCCCATCCTCCTGGGGGTTCACCGGGGAGTTGCAGTAGACCGATCAAGTGGATTATGAGCCCTCATCCCGCACTTTTCCACCAGCAGCATCAGTCACCTTCCATTCTCAGGGCTTCCTCGGGAGTCTCCATTCAG
Seq A exon
GGTTCCCGGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGGGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGGAGGGGGAAAGCCTGGGAGGAGCTCCGAGAG
Seq C2 exon
GAGACATTCCAAATGAGACAGAGTGGGGCTGCAAGGAAGGAGGAGAGAGACCGGCAGAGGCTCCTGCTCAGTTGCAACCTAAAGAGGTGGTTGAACATAAGACTTATTCCATGGCTACCAAGTCCTCTGCAGGGGCACAGCCACCTACCAAAGCTGCCCCAGACCAGATAGCAGGTGTGCAGCTTCCTGTCCAGGTACCAAACACCGATATTCAGGCCAGCCAGCGACGTCATGTGTGTGTGGACTGTGGACGCCGGTTTACCTATCCATCTTTGCTGGTCAGCCACCGGCGCATGCACTCTGGTGAGCGACCCTTCCCCTGCCCAGAGTGTGGTGTACGCTTCAAGAGGAAGTTCGCAGTGAAAGCACACCAATGGATCCACCGTTCCTGCTCAGGGGGTCGCCGCGGCCGAAGGCCTGGGATCAGGGCTGTGCCTGGAGCCCCAGTCCGAGGTGACCGGGATCCACCAGTGCTCTTTCGGCACTATCCAGACATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045251_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.742 C2=0.557
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=15.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCCTGTATCGGGAGGTG
R:
GCCCCACTCTGTCTCATTTGG
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: