BtaEX0041494 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019357 | ZNF688
Description
zinc finger protein 688 [Source:HGNC Symbol;Acc:HGNC:30489]
Coordinates
chr25:26993387-26996169:-
Coord C1 exon
chr25:26995763-26996169
Coord A exon
chr25:26995336-26995449
Coord C2 exon
chr25:26993387-26994116
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGATCCCTGTTCTCTCCCAGGAT
3' ss Score
9.33
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTCCAAGCTGCCATGAAGTGAATAAACACCGAGGCGGTCTATTTGTCCCCATCAGAATCCCGAATCCCAGCCCTGCTACTTCGGTTCCCTTGGCTGCATACGGAAGCCGAGGCTGGGCGGGGCCTCGGGCTCAGGAGCCCTTCTTGTGGACGACGAGAGCTGAGGCCGGGCGCGGGGACCAGGCGGCCGCTGCTCGGGGCTGGGAGGCCCCATGGCGCCGCCCCCGGCCCCGCTCCTGGTGCTGAGACCGGGGGAGACCGGGCCTGGTTGCAAGAAGCCCTTGGCCGTGAGGTTCGCGGATGTGGCCGTGTACTTCTCCCCGGAGGAGTGGGGGTGTCTGCGGCCCGCGCAGAGAGCCCTGTACCGGGACGTGATGCAGGAGACCTACGGCCACCTGGGCGCGCTCG
Seq A exon
GATTCCCAGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGAGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGGAGGGGGAAAGCCTGGGAGGAGCTCTGAGAG
Seq C2 exon
GAGCTACCCCCAACAAAAAGGAAGAGGAACCCGAAGCAGGACTAGGAGCCAAATCACCGAGAAAGGCTCCTGGGAAGGAGAGGCCTGAGGAGCTGGTTAAACACAACCCTGGCACGACCGTCAGCAAAACCTCGGCCAGAGCACAGGCACCCAGACAAGCTGTCTGGGACCAGGGTGCAGGTGCTCAGTCCCCGGCCCCTGTACCCAGCGCGGATGCTCAGGCCAGCCAGCGGCGCCACGTGTGTGCAGACTGCGGTCGGCGCTTCACCTACCCCTCGCTGCTGGTCAGCCACCGACGCATGCACTCGGGTGAGCGGCCGTTCCCCTGCCCCGAGTGTGGCATGCGCTTCAAGAGGAAGTTCGCTGTGGAAGCTCACCAGTGGATCCACCGCTCCTGCTCTGGGGGGCGGCGGGGCCGGAGGCCCGGGATCCGGGCTGTGCCTCGGGCCCCGGTCCGAGGTGACCGGGACCCTCCGGTGCTATTCCGGCACTACCCGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019357_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.897 C2=0.662
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=62.1)
A:
PF0135222=KRAB=PD(0.1=0.0),PF050538=Menin=PU(23.1=79.5)
C2:
PF050538=Menin=PD(76.1=58.6),PF134651=zf-H2C2_2=WD(100=14.9)
Main Inclusion Isoform:
ENSBTAT00000024083fB8053
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTTGCAAGAAGCCCTT
R:
GTTTAACCAGCTCCTCAGGCC
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development